BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945497
Length=397
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25845.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 545 9e-155
> AT4G25845.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: OSBP(oxysterol binding protein)-related protein 4B
(TAIR:AT4G25850.2); Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974;
Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes
- 9610 (source: NCBI BLink). | chr4:13142088-13142821 FORWARD
LENGTH=734
Length=734
Score = 545 bits (295), Expect = 9e-155
Identities = 355/383 (93%), Gaps = 7/383 (2%)
Strand=Plus/Plus
Query 16 TTCTAATTATGAAGAAGGATATATGCAAGGAAGGATCATCAATCTCGAGAAACTCATCGG 75
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 175 TTCTAATTATGAAGAAGGATACATGCAAGGAAGGATCATCAATCTCGAGAAACTCATCGG 234
Query 76 TGGGATACTACGATGAGCGGAGGCCAGAGGGTATTCCTTTCAAGTGGGAGATGCAGCCAG 135
|||||||||| ||||| |||| |||||||||| |||| ||| ||||||||||||||||||
Sbjct 235 TGGGATACTATGATGAACGGATGCCAGAGGGTGTTCCGTTCGAGTGGGAGATGCAGCCAG 294
Query 136 GGACTCCCATTAATACTCACCCACAGGAGGATGTTCCTCCATTAAGTCCCCCTCCAGCGA 195
||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||| |
Sbjct 295 GGACTCCCATTAATACTCAACCACGGGAGGTTGTTCCTCCATTAAGTCCTCCTCCAGCTA 354
Query 196 TGCTCAGCCTTGGCCTCCCCAAGCCATCCATCTCCATCGAAGAGCCAAAGAACTTTGTGT 255
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TGCTCAGCCTCGGCCTCCCCAAGCCATCCATCTCCATCGAAGAGCCAAAGAACTTTGTGT 414
Query 256 TTCCAGCGAAGCTGAAGCTGAAGCTGCGGAATTGGAAACATCTTCATTGCAAGAGATATT 315
||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TTCCA---A--C-GAAGCTGAAGCTGCGGAATTGGAAACATCTTCATTGCAAGAGATATT 468
Query 316 TTTCTAGATTGACTAACAAAACGGTTTTGTCTTCGATTTGTTTGTACCATAACAAACGCT 375
||||||||||||||||||||| |||||||||||| ||||||||||||| | | |||||||
Sbjct 469 TTTCTAGATTGACTAACAAAATGGTTTTGTCTTCAATTTGTTTGTACCCTGATAAACGCT 528
Query 376 AAATGTGCAAAAA-TGAATAAAA 397
| ||||| ||||| ||||| |||
Sbjct 529 ACATGTGGAAAAAATGAATCAAA 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18749870377
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5