BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945508
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25750.1 | Symbols: | ABC-2 type transporter family protein... 2682 0.0
AT5G52860.1 | Symbols: | ABC-2 type transporter family protein... 1230 0.0
> AT4G25750.1 | Symbols: | ABC-2 type transporter family protein
| chr4:13110627-13112360 REVERSE LENGTH=1734
Length=1734
Score = 2682 bits (1452), Expect = 0.0
Identities = 1643/1737 (95%), Gaps = 6/1737 (0%)
Strand=Plus/Plus
Query 21 ATGGAGTCATATACTTTATCCACCTCTTCCATCTCCTACGCCAAACCTCTTTCACCGCTC 80
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTCGTACACTTTATCCACCTCTTCCATCTCCTACGCCAAACCTCTTTCACCGCTC 60
Query 81 CTCCTCACGGCCGAGCAACCTT-CTTACATCCTCCGCAACATCACTCTCACCTCTCATCC 139
||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 61 CTCCTCACGGCGGAGCAACCTTCCTT-CATCCTCCGCAACATCACTCTCACCTCTCATCC 119
Query 140 TTCCCAAATTCTCGCCATTGTTGGCCCTAGCGGCGCCGGAAAATCAACTCTTCTCGATAT 199
||||||||| ||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 120 TTCCCAAATCCTCGCCATTATTGGCCCTAGCGGCGCCGGAAAATCAACTCTCCTTGATAT 179
Query 200 CCTCGCCGCGAGAACCTTCCCGACCTCTGGCTCAATGCATCTAAACTCCGTCCCTATTAA 259
||| ||||| ||||||| ||||||||| |||||||| | |||||||||||||| ||||||
Sbjct 180 CCTTGCCGCAAGAACCTCCCCGACCTCAGGCTCAATACTTCTAAACTCCGTCCTTATTAA 239
Query 260 CCCTTCTTCTTACCGTAAAATCTCCTCCTACGTTCCTCAACACGACACCTTCTTCCCTCT 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCCTTCTTCTTACCGTAAAATCTCCTCCTACGTTCCTCAACACGACACCTTCTTCCCTCT 299
Query 320 CCTCACCGTCTCCGAGACCTTCACTTTCTCTGCCTCTCTCTTGCTCCCAAAAATCCCATC 379
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 300 CCTCACCGTCTCCGAGACCTTCACTTTCTCCGCCTCTCTCTTGCTCCCAAAAAACCTATC 359
Query 380 AAAAGTCTCCAATGTCGTCGTTTCTCTCCTCAAAGAACTAAACTTAACACATCTTGCACA 439
||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct 360 AAAAGTCTCCAGTGTCGTTGCTTCTCTCCTCAAAGAACTAAACCTAACACATCTTGCACA 419
Query 440 TACAAGACTCGGTCAAGGCTTGTCCGGTGGTGAACGTAGGAGGATTTCAATCGGTCTAAG 499
||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 420 TACAAGACTAGGTCAAGGCTTGTCCGGTGGTGAACGCAGGAGGGTTTCAATTGGTCTAAG 479
Query 500 TCTTCTTCACGATCCAGAATTTCTACTGCTTGACGAACCCACCTCGGGTTTAGACAGTAA 559
||||||||| ||||| ||| | ||||| || |||||||||||||||||||||||||||||
Sbjct 480 TCTTCTTCATGATCCGGAAGTACTACTCCTCGACGAACCCACCTCGGGTTTAGACAGTAA 539
Query 560 ATCCGCTTTTGATGTCGTTCAGATTCTCAAATTTATTGCTACGTCGAGACAACGAATCGT 619
||||||||| ||||||||||| |||||||||| |||||| ||||| ||| || | |||||
Sbjct 540 ATCCGCTTTCGATGTCGTTCAAATTCTCAAATCTATTGCGACGTCCAGAGAAAGGATCGT 599
Query 620 GATCTTGTCCATACATCAACCTAGCTTCAAGATTCTATCTCTCATTGATCGCGTGTTACT 679
||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 600 GATCTTGTCCATACACCAACCTAGCTTCAAGATCCTGTCTCTCATCGATCGCGTGTTACT 659
Query 680 TCTTTCTAAAGGAACCGTTGTATACCATGGAAGACTTGACTTACTCGAAGCTTTCTTGCT 739
||||||||||||||| ||||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct 660 CCTTTCTAAAGGAACCATTGTATATCATGGAAGGCTTGACTTACTTGAAGCATTCTTGCT 719
Query 740 CTCCAAGGGATTCACTGTTCCTCCTCAGCTGAATTCTCTTGAGTACGCTATGGAGATACT 799
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 CTCCAAGGGATTCACGGTTCCTTCTCAGCTGAATTCTCTTGAGTACGCTATGGAGATACT 779
Query 800 TCAGAACCTCCATGATCCCTACGAGAACGCCAACATTGCTCTCCCAGATCACTGCCCTGA 859
||||||| ||| |||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 780 TCAGAACATCCGTGATCCCTACGAAAACGCCAACATTGCTCTTCCAGACCACTGCCCTGA 839
Query 860 AAGTAAAAAACAGAA-CAACAAACAGAGCATTGTTCGACATAAAAGCTCGAGAATTAACG 918
||||||||||||||| ||| |||||||||||||||||| |||||||||||||||| | ||
Sbjct 840 AAGTAAAAAACAGAACCAA-AAACAGAGCATTGTTCGATATAAAAGCTCGAGAATCACCG 898
Query 919 AAATAAGCCTTCTTTCTAGTAGATTCTGGAAGATCATATACCGAACAAGGCAGTTGCTTC 978
||||||||||||| ||||| || || ||||||||||||||||| ||||||||||||||||
Sbjct 899 AAATAAGCCTTCTCTCTAGCAGGTTTTGGAAGATCATATACCGTACAAGGCAGTTGCTTC 958
Query 979 TAACCAACTTCTTAGAAGCTCTTGTAGTCGGTCTTGTCTTAGGCACTATCTACCTAAATA 1038
|||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 TAACAAACATCTTAGAATCTCTTGTAGTCGGTCTTGTCTTAGGCACTATCTACCTTAATA 1018
Query 1039 TTGGAACCGGCAAAGAAGGAATCAAGAAGCGATTCGGCCTTTTTGCATTCACCCTCACAT 1098
| ||||| |||||||||||||||| ||| ||||| |||||||| ||||||||||||||||
Sbjct 1019 TCGGAACTGGCAAAGAAGGAATCAGGAAACGATTTGGCCTTTTCGCATTCACCCTCACAT 1078
Query 1099 TCCTCCTCTCCTCCACTACCCAAACCCTTCCAATATTCATTGATGAACGACCTATTCTTC 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCCTCCTCTCCTCCACTACCCAAACCCTTCCAATATTCATTGATGAACGACCTATTCTTC 1138
Query 1159 TCCGAGAAACCTCAAGCGGACTCTACAGACTCTCCTCTCACATTCTTGCAAACACCTTGG 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1139 TCCGAGAAACCTCAAGCGGACTCTACAGACTCTCCTCTCACATTCTTGCAAACACTTTGG 1198
Query 1219 TTTTCTTGCCCTACTTGCTCCTCATCGCAATCATCTACTCTGTCTCACTCTATTTCCTTG 1278
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TTTTCTTGCCATACTTGCTACTCATCGCAATCATCTACTCTGTCTCACTCTATTTCCTTG 1258
Query 1279 TAGGTCTCTGCTTTTCATGGCAAGCTTTCGCCTACTTTGTGCTCGTAATCTGGATCATTG 1338
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1259 TAGGACTCTGCTTTTCATGGCAAGCTCTCGCCTACTTTGTGCTCGTAATCTGGATCATTG 1318
Query 1339 TCCTAATGGCTAACTCTTTTGTCCTTTTCTTGAGCTCTCTCGCGCCTAACTACATCGCTG 1398
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 1319 TCCTAATGGCTAACTCTTTTGTACTTTTCTTGAGCTCTCTCGCACCTAACTACATTGCTG 1378
Query 1399 GTACATC-TCTAGTGACCATTCTTCTTGCGGCTTTCTTCTTGTTCTCTGGCTACTTCATC 1457
| ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1379 GAACATCTTC-AGTGACCATTCTTCTTGCGGCTTTCTTCTTGTTCTCTGGTTACTTCATC 1437
Query 1458 TCTAAAGAGAGTCTTCCAAAGTACTGGCTCTTTATGTACTTCTTCTCAATGTACAAGTAT 1517
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1438 TCTAAAGAGAGTCTTCCCAAGTACTGGCTCTTCATGTACTTCTTCTCAATGTACAAGTAT 1497
Query 1518 GCGTTGGACGCACTTCTGATAAATGAGTATTCGTGTCTGCACAACAAGTGCCTGGTCTGG 1577
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1498 GCGTTGGACGCACTTCTGATAAATGAGTACTCGTGTCTGCACAACAAGTGCCTGGTCTGG 1557
Query 1578 TTTGAGGAAGCTTCTGTGAATAGCTGCTTAGTTACTGGAGGTGACGTGTTAGACAAGAAT 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TTTGAGGAAGCTTCTGTGAATAGCTGCTTAGTTACTGGAGGTGACGTGTTAGACAAGAAT 1617
Query 1638 GGGCTTCATGAGAGACAGAGGTGGTTTAATGTTTATATGTTGTTAGGGTTCTTCGTACTA 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GGGCTTCATGAGAGACAGAGGTGGTTTAATGTTTATATGTTGTTAGGGTTCTTCGTACTA 1677
Query 1698 TATCGTGTTTTGTGTTTTCTTATTTTGCTTAAAAGGGTTTCGGGTTCCAAAAGATAA 1754
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1678 TATCGTGTTTTGTGTTTTCTTGTTTTGCTTAAAAGGGTTTCGGGTTCCAAAAGATAA 1734
> AT5G52860.1 | Symbols: | ABC-2 type transporter family protein
| chr5:21419776-21421567 REVERSE LENGTH=1792
Length=1792
Score = 1230 bits (666), Expect = 0.0
Identities = 1408/1760 (80%), Gaps = 76/1760 (4%)
Strand=Plus/Plus
Query 36 TTATCCACCTCTTCCATCTCCT--A-C--GCC--AAACCTCTTTCACCGCTCCT-C-C-T 85
||| |||||||||| ||||||| | | || |||||||| || || ||||| | | |
Sbjct 68 TTAACCACCTCTTCAATCTCCTACACCATACCAAAAACCTCTCTCTCC-CTCCTCCGCTT 126
Query 86 CACGGC--C-GAG-CAACCTTCTTACATCCTCCGCAACATCACTCTCACCTCTCATCCTT 141
| |||| | ||| || ||| ||| |||||||||||||||||||||||| |||||||
Sbjct 127 CCCGGCGACTGAGCCACCCTCCTT-TATCCTCCGCAACATCACTCTCACCGCTCATCCAA 185
Query 142 CCCAAATTCTCGCCATTGTTGGCCCTAGCGGCGCCGGAAAATCAACTCTTCTCGATATCC 201
|| | || |||||| | ||||||||| ||||||||||||||||||||| || || || |
Sbjct 186 CCGAGATCCTCGCCGTCGTTGGCCCTTCCGGCGCCGGAAAATCAACTCTCCTTGACATTC 245
Query 202 TCGCCGCGAGAACCTTCCCGACCTCTGGCTCAATGCAT-CTAAACTCC-GTCCCTATTAA 259
||||| | | ||||| ||| || || || ||||| | | || |||||| |||| |||||
Sbjct 246 TCGCCTCTAAAACCTCCCCAACTTCCGGTTCAAT-CCTCCTTAACTCCATTCCC-ATTAA 303
Query 260 CCCTTCTTCTTACCGTAAAATCTCCTCCTACGTTCCTCAACACGACACCTTCTTCCCTCT 319
|||||| ||||| || ||||||||||| |||||||| ||||| ||| | |||||||||||
Sbjct 304 CCCTTCCTCTTATCGAAAAATCTCCTCTTACGTTCCCCAACATGACTCTTTCTTCCCTCT 363
Query 320 CCTCACCGTCTCCGAGACCTTCACTTTCTCTGCCTCTCTCTTGCTCCCAAAAATCCCATC 379
|||||||||||||||||||||| | ||| |||| | |||||||||||| ||| ||||||
Sbjct 364 CCTCACCGTCTCCGAGACCTTCTCCTTCGCTGCTTGTCTCTTGCTCCC--AAA-CCCATC 420
Query 380 AAAAGTCTC-CAATGTCGTCGTTTCTCTCCTCA-AAGAACTAAACTTAACACATCTTGCA 437
|| ||| || || ||| ||||| || | ||| || ||| ||||||||||| |
Sbjct 421 AATAGTTTCTGAA-ACCGTAACCTCTCTTCT-ATCAGAGCTTAACCTAACACATCTTTCC 478
Query 438 CATACAAGACTCGGTCAAGGCTTGTCCGGTGGTGAACGTAGGAGGA-TTTCAAT-CGGTC 495
|| |||||||||| ||||||||| |||||||| ||| | | || || | || || |||
Sbjct 479 CACACAAGACTCGCTCAAGGCTTATCCGGTGGCGAAAG-AAGAAGAGTCTCGATAGGGT- 536
Query 496 TAAGTCTTCTTCACGATCC-AGAATTTCTACTGCTTGACGAACCCACCTCGGGTTTAGAC 554
|||| || |||||||| || | ||||| || || || |||||||| ||||||||||||
Sbjct 537 TAAGCCTCCTTCACGACCCTTG-CTTTCTTCTCCTCGATGAACCCACTTCGGGTTTAGAC 595
Query 555 AGTAAATCCGCTTTTGATGTCGTTCAGATTCTCAAATTTATTGCTACGTCGAGACAACGA 614
||||||||||||||||| ||| |||| || ||||||| || ||| ||| ||||||||
Sbjct 596 AGTAAATCCGCTTTTGACGTCATTCACATCCTCAAATCCATCGCTGTGTCAAGACAACGG 655
Query 615 ATCGTGATCTTGTCCATACATCAACCTAGCTTCAAGATTCTATCTCTCATTGATCGCGT- 673
| |||||| |||||||| || || ||||||||||||||||| ||| |||| ||||| ||
Sbjct 656 ACCGTGATATTGTCCATTCACCAGCCTAGCTTCAAGATTCTGTCTATCATCGATCG-GTT 714
Query 674 GTTACTTCTTTCTAAAGGAACCGTTGTATACCATGGAAGACTTGACTTACTCGAAGCTTT 733
|||||||||||| |||||||| ||||| ||||| ||||||||||||| ||||||| |||
Sbjct 715 GTTACTTCTTTCAAAAGGAACTGTTGTGTACCACGGAAGACTTGACTCCCTCGAAGGTTT 774
Query 734 CTTGCTCTCCAAGGGATTCACTGTTCCTCCTCAGCTGAATTCTCTTGAGTACGCTATGGA 793
|||||||| ||||||||| || || ||||| ||||| ||||| ||||| || || |||||
Sbjct 775 CTTGCTCTTCAAGGGATTTACCGTCCCTCCGCAGCTCAATTCCCTTGAATATGCAATGGA 834
Query 794 GATACTTCA-GAACCTCC-ATGA-TCCCTACGAGAA-CGCCAA--C-ATTGCTCTCCCAG 846
|||||||| |||| | | | || ||| ||| ||| | || | | | |||||||||
Sbjct 835 AATACTTCAAGAAC-TACGA-GAATCCG-ACG-GAAACACCGATGCTACTGCTCTCCCT- 889
Query 847 ATCACTGCCCTGAAAGTAAAAAACAGA-ACAACAAACAGAGCATTGTTCGACATA-AAAG 904
||| | | |||| ||||||| | || |||||||| ||||||||| ||| |||
Sbjct 890 -TCAAT-C---GAAAACCGGAAACAGAGAGAA-AAACAGAGTATTGTTCGATATAGAAAA 943
Query 905 CTCGAGAATTAACGAAATAAGCCTTCTTTCTAGTAGATTCTGGAAGATCATATACCGAAC 964
|| ||||| | ||| ||||||||||| | || ||||||||||||||||| ||||| ||
Sbjct 944 -TCAAGAATCACCGAGATAAGCCTTCTCGCGAGAAGATTCTGGAAGATCATTTACCGGAC 1002
Query 965 AAGGCAGTTGCTTCTAACCAACTTC-TTAGAAGCTCTTGTAGTCGGTCTTGTCTTAGGCA 1023
|||||| | ||||||||||| | | |||||||| |||||||| ||||||||| |||| |
Sbjct 1003 AAGGCAACTACTTCTAACCAA-TGCATTAGAAGCCCTTGTAGTTGGTCTTGTCCTAGGAA 1061
Query 1024 CTATCTACCTAAATATTGGAACCGGCAAAGAAGGAATCAAGAAGCGATTCGGCCTTTTTG 1083
|||||||| | || || |||| |||||||| |||||| |||| ||||||| | || |
Sbjct 1062 CTATCTACATCAACATCGGAATCGGCAAAGCAGGAATTGAGAAAAGATTCGGTATGTTCG 1121
Query 1084 CATTCACCCTCACATTCCTCCTCTCCTCCACTACCCAAACCCTTCCAATATTCATTGATG 1143
| ||||| ||||| || |||||||| || || ||| ||||||| || || ||||| | |
Sbjct 1122 CCTTCACGCTCACTTTTCTCCTCTCTTCAACAACCGAAACCCTCCCGATCTTCATCAACG 1181
Query 1144 AACGACCTATTCTTCTCCGAGAAACCTCAAGCGG-ACTCTACAGACTCTCCTCTCACATT 1202
| || || ||||||||| | || || || || || | | |||||||||||||||||||||
Sbjct 1182 AGCGTCCAATTCTTCTCAGGGAGACTTCGAGTGGTATT-TACAGACTCTCCTCTCACATT 1240
Query 1203 CTTGCAAACAC-CTTGGTTTTCTTGCCCTACTTGCTCCTCATCGCAATCATCTACTCTGT 1261
|| ||||| || || | | |||||||| |||||| || | ||| ||||||| ||||||||
Sbjct 1241 CTCGCAAATACACTCG-TATTCTTGCCGTACTTGTTCGTTATCTCAATCATTTACTCTGT 1299
Query 1262 CTCACTCTATTTCCTTGTAGGTCTCTGCTTTTCATGGCAAGCTTTCGCCTACTTTGTGCT 1321
|| |||||||||| | ||||||||| ||||||||||||| | ||||| || ||
Sbjct 1300 TTCGGTCTATTTCCTCATTGGTCTCTGCCCCACATGGCAAGCTTTTGGGTACTTCGTTCT 1359
Query 1322 CGTAATCTGGATCATTGTCCTAATGGCTAACTCTTTTGTCCTTTTCTTGAGCTCTCTCGC 1381
||| || ||||||||| |||||||||| ||||||||||| || |||||||||||||| ||
Sbjct 1360 CGTGATATGGATCATTCTCCTAATGGCGAACTCTTTTGTTCTCTTCTTGAGCTCTCTTGC 1419
Query 1382 GCCTAACTACATCGCTGGTACATCTCTAGTGACCATTCTTCTTGCGGCTTTCTTCTTGTT 1441
|| || ||||| | || || ||||| ||||| |||||||| |||||||||||||||||
Sbjct 1420 CCCAAATTACATTACGGGAACCTCTCTTGTGACAATTCTTCTAGCGGCTTTCTTCTTGTT 1479
Query 1442 CTCTGGCTACTTCATCTCTAAAGAGAGTCTTCCAAAGTACTGGCTCTTT-ATGTACTTCT 1500
|| || |||||||| || || || |||||||| ||||||||||| ||| ||||||||||
Sbjct 1480 TTCCGGTTACTTCATTTCCAAGGAAAGTCTTCCCAAGTACTGGCT-TTTCATGTACTTCT 1538
Query 1501 TCTCAATGTACAAGTATGCGTTGGACGCACTTCTGATAAATGAGTATTCGTGTCT--GCA 1558
|||||||||| |||||||| ||||| |||||||||||||| ||||| ||||| || ||
Sbjct 1539 TCTCAATGTATAAGTATGCATTGGATGCACTTCTGATAAACGAGTACTCGTG-CTTAGC- 1596
Query 1559 CAACAAGTGCCTGGTCTGGTTTGAGGAAGCTTCTGTGAATAG--CTGCTTAGTTACTGGA 1616
| |||||| |||||||||| ||||||||| | || || |||| | |||||||||
Sbjct 1597 CTCCAAGTGTTTGGTCTGGTTGGAGGAAGCT-CAAACAA-AGATCTGCATGGTTACTGGA 1654
Query 1617 GGTGACGTGTTAGAC-AAGAATGGGCTTCATGAGAGACAGAGGTGGTTTAATGTTTATAT 1675
||||||||||| || ||||| || |||||||||| |||||||||||||||||||||| |
Sbjct 1655 GGTGACGTGTT-GAAGAAGAAAGGACTTCATGAGAAACAGAGGTGGTTTAATGTTTATGT 1713
Query 1676 GTTGTTAGGGTTCTTCGTACTATATCGTGTTTTGTGTTTTCTTATTTTGCTTAAAAGGGT 1735
||||||||||| |||||||| |||||||| |||||||||||| | | |||| ||| ||
Sbjct 1714 TTTGTTAGGGTTTTTCGTACTTTATCGTGTGTTGTGTTTTCTTGCTCTCCTTAGAAGAGT 1773
Query 1736 TTCGGGTTCCAAA-AGATAA 1754
||| ||||| ||| || |||
Sbjct 1774 TTCTGGTTC-AAAGAGGTAA 1792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87800753205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5