BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945513

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27630.3 | Symbols: GTG2 | GPCR-type G protein 2 | chr4:1379...   158    5e-38


> AT4G27630.3 | Symbols: GTG2 | GPCR-type G protein 2 | chr4:13791642-13797147 
REVERSE LENGTH=1781
Length=1781

 Score =  158 bits (85),  Expect = 5e-38
 Identities = 87/88 (99%), Gaps = 0/88 (0%)
 Strand=Plus/Plus

Query  248  AAAGGTTTCTTTTCAATGCCTCAACTGGTCAGCAGAATCGGGGTCATTGGTGTGACCCTC  307
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  532  AAAGGTTTCTTTTCAATGCCTCAGCTGGTCAGCAGAATCGGGGTCATTGGTGTGACCCTC  591

Query  308  ATGGCCGTCTTATCGGGTTTTGGAGCTG  335
            ||||||||||||||||||||||||||||
Sbjct  592  ATGGCCGTCTTATCGGGTTTTGGAGCTG  619



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21062186831


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5