BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945520
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25660.1 | Symbols: | PPPDE putative thiol peptidase family... 1299 0.0
AT4G25680.1 | Symbols: | PPPDE putative thiol peptidase family... 1062 0.0
> AT4G25660.1 | Symbols: | PPPDE putative thiol peptidase family
protein | chr4:13083407-13085188 FORWARD LENGTH=1237
Length=1237
Score = 1299 bits (703), Expect = 0.0
Identities = 786/824 (95%), Gaps = 14/824 (2%)
Strand=Plus/Plus
Query 1 GTGTTTCTTGGTAAAGATAGAATCAATGGCGGAGGTTGTTCTGCACATATACGATGTGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GTGTTTCTTGGTAAAGATAGAATCAATGGCGGAGGTTGTTCTGCACATATACGATGTGAC 305
Query 61 GAACAGTGGATCGGAGAAGACTAACAACACCATTGTTCAGATCAATAGGTTCTTTAAAGA 120
|||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 306 GAACAGTGGATCAGAGAAGACTAACAACACCATAGTTCAGATCAATAGGTTCTTCAAAGA 365
Query 121 TGGGATCGGTCTAGGCGGTATATTCCACAGCGCTATTCAGGTATATGGAAACGATGAATG 180
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CGGGATCGGTCTTGGCGGTATATTCCACAGCGCTATTCAGGTATATGGAAACGATGAATG 425
Query 181 GTCTTACGGGTATTGTGAACAAGGAGGAACTGGTGTGTTCAGCTGTCCTAGTGGCAAGAA 240
|||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 426 GTCTTATGGGTATTGTGAAC-A--AGGAACTGGTGTGTTCAGCTGTCCTAGTGGCAAGAA 482
Query 241 TCCAATGTACACATATCGTGAGAAAATTGTTCTTGGCAAGACAGATTGTACAATCTTCTT 300
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 483 TCCAATGTACACATATCGTGAGAAAATTGTTCTTGGGAAGACAGATTGTACAATCTTCAT 542
Query 301 GGTAAATCAGATCTTGCGTGAGCTCAGCAGGGAATGGCCTGGACACACTTATGATTTGCT 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 543 GGTAAATCAGATCTTGCGTGAGCTCAGCAGGGAATGGCCAGGACACACTTATGATTTGCT 602
Query 361 GTCCAAAAATTGCAACCACTTCTGTGATGTATTATGTGACCGGCTTGGTGTGCCAAAGAT 420
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 603 GTCCAAAAATTGCAATCACTTCTGCGATGTATTATGTGACCGCCTTGGTGTGCCAAAGAT 662
Query 421 CCCAGGTTGGGTGAATCGTTTTGCTCATGCTGGCGACACAGCCTTGGAAGTGGCAGGAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 663 CCCAGGTTGGGTGAATCGTTTTGCTCATGCTGGCGACACAGCCTTGGAAGTAGCAGGAAA 722
Query 481 CACAGCAATGCGGGTAAAGCAAGCCAAAACTGAACTCGTGTCAGCTAGTAAAGTGGCTTA 540
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 723 CACAGCAATGCGGGTAAAGCAAGCCAAAACTGAACTTGTTTCAGCCAGTAAAGTGGCTTA 782
Query 541 TCGCTTCCTTTCGAATGTTACCTCGAACATAACCAATGGTTCGAATGGCCCCAATGGCTC 600
|||||||||||||||||||||||| ||||||||||||||||| || | ||||||
Sbjct 783 TCGCTTCCTTTCGAATGTTACCTCAAACATAACCAATGGTTC-AA-------A-TGGCTC 833
Query 601 CAATGGCTCTCCACAACGGCCAGGAACTCTCAACAATTCAGACAATGGGAACTTTAGATT 660
|| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 834 CAGTGGCTCTCCACAGCGGCCAGGAACTCTCAACAATTCAGACAATGGGAGCTTTAGATT 893
Query 661 GCAAGGTAGTTGGTTGAAAGGTATACTTAACACTGCCAAACCCTCCACAAGTACAGAGAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GCAAGGTAGTTGGTTGAAAGGTATACTTAACACTGCCAAACCCTCCACAAGTACAGAGAT 953
Query 721 AGGGAACAAAGAGGAAGATGCAAATCATACAATCGCGAATCAGAAAAAGCA-AAGCCGTG 779
||||||||||||||||||| |||||||||||||| | |||||||||||||| || |||||
Sbjct 954 AGGGAACAAAGAGGAAGATACAAATCATACAATCACCAATCAGAAAAAGCAGAA-CCGTG 1012
Query 780 ACTCTGATGCTCTACTATTTCAGTAGCAACTGTACTGATCCACC 823
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1013 ACTCTGATGTTCTACTATTTCAGTAGCAACTGTACTGATCCACC 1056
> AT4G25680.1 | Symbols: | PPPDE putative thiol peptidase family
protein | chr4:13088166-13090161 FORWARD LENGTH=1227
Length=1227
Score = 1062 bits (575), Expect = 0.0
Identities = 746/825 (90%), Gaps = 25/825 (3%)
Strand=Plus/Plus
Query 1 GTGTTTCTTGGTAAAGATAGAATCAATGGCGGAGGTTGTTCTGCACATATACGATGTGAC 60
||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 235 GTGTTGCTTGGTAAATATAGAATCAATGACGGAGGTTGTTCTGCATATATACGATGTGAC 294
Query 61 GAACAGTGGATCGGAGAAGACTAACAACACCATTGTTCAGATCAATAGGTTCTTTAAAGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 295 GAACAGTGGATCGGAGAAGACTAACAACACCATTGTTCAGATCAATAGGTTCTTCAAAGA 354
Query 121 TGGGATCGGTCTAGGCGGTATATTCCACAGCGCTATTCAGGTATATGGAAACGATGAATG 180
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CGGGATCGGTCTTGGCGGTATATTCCACAGCGCTATTCAGGTATATGGAAACGATGAATG 414
Query 181 GTCTTACGGGTATTGTGAACAAGGAGGAACTGGTGTGTTCAGCTGTCCTAGTGGCAAGAA 240
|||||||||||||||||||| |||| | ||||||| |||||||| || ||||| |||||
Sbjct 415 GTCTTACGGGTATTGTGAACTAGGA--A-CTGGTGTATTCAGCTGCCCGAGTGGAAAGAA 471
Query 241 TCCAATGTACACATATCGTGAGAAAATTGTTCTTGGCAAGACAGATTGTACAATCTTCTT 300
||||||||||||||| ||||||||||| || |||||||| |||||||| ||||||||| |
Sbjct 472 TCCAATGTACACATACCGTGAGAAAATCGTCCTTGGCAAAACAGATTGCACAATCTTCAT 531
Query 301 GGTAAATCAGATCTTGCGTGAGCTCAGCAGGGAATGGCCTGGACACACTTATGATTTGCT 360
||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 532 GGTGAATCAGATGTTGCGTGAACTCAGCAGGGAATGGCCTGGACACACTTATGATTTGTT 591
Query 361 GTCCAAAAATTGCAACCACTTCTGTGATGTATTATGTGACCGGCTTGGTGTGCCAAAGAT 420
||| ||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||
Sbjct 592 GTCAAAAAATTGCAATCACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGAT 651
Query 421 CCCAGGTTGGGTGAATCGTTTTGCTCATGCTGGCGACACAGCCTTGGAAGTGGCAGGAAA 480
|||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||
Sbjct 652 CCCAGGTTGGGTTAATCGCTTTGCTAATGCTGGGGACACAGCCTTGGAAGTGGCAGGAAA 711
Query 481 CACAGCAATGCGGGTAAAGCAAGCCAAAACTGAACTCGTGTCAGCTAGTAAAGTGGCTTA 540
||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 712 CACAGCAATGCGGATGAAGCAAGCCAAAACTGAACTTGTGTCAGCTAGTAAAGTGGCTTA 771
Query 541 TCGCTTCCTTTCGAATGTTACCTCGAACATAACCAATGGTTCGAATGGCCCCAATGGCTC 600
||||||||| ||||||||||| |||||| | | || || ||||||||
Sbjct 772 TCGCTTCCTCTCGAATGTTACTTCGAAC---------G-T---AA---CC--AATGGCTC 813
Query 601 CAATGGCTCTCCACAACGGCCAGGAACTCTCAACAATTCAGACAATGGGAACTTTAGATT 660
|||||||||||||||||| || |||||||||||||||||||||| |||||||| |||||
Sbjct 814 CAATGGCTCTCCACAACGACCGGGAACTCTCAACAATTCAGACAGCGGGAACTTGAGATT 873
Query 661 GCAAGGTAGTTGGTTGAAAGG-TATACTTAACACTGCCAAACCCTCCACAAGTACAGAGA 719
||||||||||||| | ||||| | |||||||||| |||||||||||||| ||||||||||
Sbjct 874 GCAAGGTAGTTGGCTCAAAGGCT-TACTTAACACAGCCAAACCCTCCACTAGTACAGAGA 932
Query 720 TAGGGAACAAAGAGGAAGATGCAAATCATACAATCGCGAATCAGAA-AAAGCAAAGCCGT 778
||||||||||||| ||||||||||||||| || || | |||||||| ||| |||||||||
Sbjct 933 TAGGGAACAAAGATGAAGATGCAAATCATGCAGTCACCAATCAGAAGAAA-CAAAGCCGT 991
Query 779 GACTCTGATGCTCTACTATTTCAGTAGCAACTGTACTGATCCACC 823
|||||||||| |||||| ||||||||||||| |||| ||||||||
Sbjct 992 GACTCTGATGTTCTACTGTTTCAGTAGCAACCGTACCGATCCACC 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5