BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945524
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25640.2 | Symbols: DTX35 | detoxifying efflux carrier 35 | ... 2331 0.0
> AT4G25640.2 | Symbols: DTX35 | detoxifying efflux carrier 35
| chr4:13076444-13079048 REVERSE LENGTH=1760
Length=1760
Score = 2331 bits (1262), Expect = 0.0
Identities = 1413/1487 (95%), Gaps = 5/1487 (0%)
Strand=Plus/Plus
Query 4 GTTAATCATTTTGAGGAGATGGATCCAACGACGGCGCCGTTGCTTACGCACGGTGGCGAA 63
|||||||||||| || |||||||| | ||||||||||||||||||| ||||||||||||
Sbjct 66 GTTAATCATTTTCAGAAGATGGAT-C--CGACGGCGCCGTTGCTTACACACGGTGGCGAA 122
Query 64 GTAGAAGAGGATTATGCTCCGGCCAGGAGCTGGATCGATGTCAAGCGAGTTTTGTCTACA 123
||||| ||||||||||||||||| |||||||||| |||||| || ||||| || ||||||
Sbjct 123 GTAGAGGAGGATTATGCTCCGGCGAGGAGCTGGACCGATGTGAAACGAGTCTTATCTACA 182
Query 124 GAGTCGGCCAAGATGTGGATGATAGCTGCTCCGGTGGGGTTTAACATCATCTGCCAGTAC 183
|||||||||||| ||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 183 GAGTCGGCCAAGTTGTGGATGATAGCTGCTCCTGTGGGGTTCAACATCATCTGCCAATAC 242
Query 184 GGTGTTAGCTCTGTCACTAATATCTTTGTCGGTCACATCGGCGAAGTCGAGCTCTCCGCC 243
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GGAGTTAGCTCAGTCACTAATATCTTTGTCGGTCACATCGGCGAAGTCGAGCTCTCCGCC 302
Query 244 GTCTCTATCTCTCTCTCCGTCATCGGCACCTTCTCCTTCGGTTTCTTGCTTGGTATGGGA 303
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 303 GTCTCTATCTCTCTTTCCGTCATCGGTACCTTCTCCTTCGGTTTCTTGCTTGGTATGGGA 362
Query 304 AGTGCTCTTGAAACACTCTGTGGCCAAGCATATGGAGCTGGTCAAGTCAATATGTTAGGT 363
||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 363 AGTGCTCTTGAAACATTATGTGGTCAAGCATATGGAGCTGGTCAAGTCAATATGTTAGGA 422
Query 364 GTTTATATGCAGAGATCTTGGATTATCTTATTCGTTTCTTGCTTCTTCCTCCTTCCTATT 423
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 423 GTTTATATGCAGAGATCTTGGATTATCTTGTTCGTTTCTTGTTTCTTCCTCCTTCCTATT 482
Query 424 TACATCTTTGCCACGCCAGTTCTGAGACTTCTCGGTCAAGCCGAGGAGATCGCGGTTCCA 483
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 483 TACATCTTTGCCACGCCGGTTCTGAGACTACTCGGTCAAGCAGAGGAGATCGCTGTTCCA 542
Query 484 GCTGGACAATTCACTCTTCTAACCATCCCACAACTCTTCTCACTCGCCTTCAATTTCCCA 543
|||||||| ||||||||||||||||| ||||| ||||||||||| ||||| |||||||||
Sbjct 543 GCTGGACAGTTCACTCTTCTAACCATACCACAGCTCTTCTCACTGGCCTTTAATTTCCCA 602
Query 544 ACCTCTAAGTTCCTTCAAGCACAGAGCAAAGTGGTTGCTATTGCTTGGATTGGATTTGTG 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ACCTCTAAGTTCCTTCAAGCACAGAGCAAAGTGGTTGCTATTGCTTGGATTGGATTTGTG 662
Query 604 GCTCTTGT-CCTACACGTTATTATGCTCTGGCTGTTTATAATCGTGTTTGGTTGGGGAAC 662
|||||| | ||| |||||||||||||||||| |||||||||||| |||||||||||| ||
Sbjct 663 GCTCTT-TCCCTTCACGTTATTATGCTCTGGTTGTTTATAATCGAGTTTGGTTGGGGGAC 721
Query 663 AAATGGTGCTGCTTTGGCGTTTAATATTACAAACTGGGGAACAGCAATCGCTCAAATTGT 722
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 722 AAATGGTGCTGCTTTGGCGTTTAATATTACAAACTGGGGAACTGCAATTGCTCAAATTGT 781
Query 723 TTATGTGATTGGTTGGTGTAATGAAGGCTGGACTGGTTTATCTTGGTTGGCTTTTAAAGA 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TTATGTGATTGGTTGGTGTAATGAAGGCTGGACTGGTTTATCTTGGTTGGCTTTTAAAGA 841
Query 783 GATTTGGGCTTTCGTTAGACTCTCCATTGCATCTGCTGTTATGCTTTGTCTTGAAATCTG 842
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 842 GATTTGGGCTTTCGTTAGACTCTCCATTGCATCTGCTGTTATGCTTTGTCTTGAGATCTG 901
Query 843 GTATATGATGAGTATCATCGTCCTTACTGGCCGCCTTGACAATGCTGTTATCGCTGTTGA 902
|||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||
Sbjct 902 GTATATGATGAGTATCATTGTTCTTACTGGCCGTCTTGACAATGCAGTTATCGCTGTTGA 961
Query 903 TTCCCTTTCTATATGCATGAATATCAACGGCTTGGAGGCCATGTTGTTCATAGGAATAAA 962
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 962 TTCCCTTTCTATATGCATGAATATCAACGGCTTGGAGGCTATGTTATTCATCGGAATAAA 1021
Query 963 TGCTGCTATCAGTGTCCGTGTATCCAATGAGCTTGGCCTAGGCCGTCCACGAGCAGCTAA 1022
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TGCAGCTATAAGTGTCCGTGTATCCAATGAGCTTGGCCTAGGCCGTCCACGAGCAGCTAA 1081
Query 1023 ATACTCTGTCTATGTCACGGTCTTCCAGTCTCTCCTCATTGGTCTTGTCTTTATGGTGGC 1082
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GTACTCTGTCTATGTCACGGTCTTCCAGTCTCTCCTCATTGGTCTTGTCTTTATGGTGGC 1141
Query 1083 TATCATCATAGCCAGAGACCATTTTGCCATCATCTTCACTAGCAGCAAAGTACTTCAACG 1142
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 1142 TATCATCATAGCCAGAGACCATTTTGCTATCATCTTCACAAGCAGTAAAGTACTTCAGCG 1201
Query 1143 CGCAGTGTCTAAGCTAGCTTATCTTCTGGGAATAACCATGGTTCTAAACAGCGTGCAGCC 1202
|||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct 1202 TGCAGTGTCTAAGCTAGCTTATCTTCTTGGTATAACCATGGTTCTCAACAGTGTGCAGCC 1261
Query 1203 GGTTGTTTCGGGTGTGGCTGTTGGAGGCGGTTGGCAAGGCTTAGTGGCTTATATCAACTT 1262
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1262 GGTTGTTTCTGGTGTGGCTGTTGGAGGCGGTTGGCAAGGCTTAGTGGCCTATATCAACTT 1321
Query 1263 GGGTTGTTACTACATTTTCGGCCTTCCCTTTGGATATCTTCTTGGTTACAAAGCAAACTT 1322
||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1322 GGGCTGTTACTACATTTTTGGCCTTCCCTTTGGATATCTTCTTGGTTACATTGCAAACTT 1381
Query 1323 TGGAGTGATGGGACTTTGGTCTGGAATGATAGCCGGGACAGCGCTTCAAACGTTGTTACT 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TGGAGTGATGGGACTTTGGTCTGGAATGATAGCCGGGACAGCGCTTCAAACGTTGTTACT 1441
Query 1383 GTTGATTGTTCTGTATAAGACAAACTGGAATAAAGAGGTGGAGGAGACGATGGAACGAAT 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1442 GTTGATTGTTCTGTATAAGACAAACTGGAATAAAGAGGTGGAGGAGACGATGGAACGTAT 1501
Query 1443 GAAGAAATGGGGAGGGAGTGAGACGACATCAAAGGATGTAATTGCGT 1489
|||||||||||||||||||||||||||||| |||||| || ||||||
Sbjct 1502 GAAGAAATGGGGAGGGAGTGAGACGACATCCAAGGATATACTTGCGT 1548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74598009870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5