BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945550
Length=1990
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25390.1 | Symbols: | Protein kinase superfamily protein | ... 2928 0.0
AT5G51770.1 | Symbols: | Protein kinase superfamily protein | ... 529 5e-149
> AT4G25390.1 | Symbols: | Protein kinase superfamily protein
| chr4:12977341-12979568 FORWARD LENGTH=2228
Length=2228
Score = 2928 bits (1585), Expect = 0.0
Identities = 1865/2001 (93%), Gaps = 16/2001 (1%)
Strand=Plus/Plus
Query 1 CTTCGGTTTACTAAATC-CATATGCCGTCACGACCAATCTCGGCGCCGGTTCC-G----- 53
||||||||||||||||| | ||||||||||||| |||||||||| |||||||| |
Sbjct 131 CTTCGGTTTACTAAATCTC-TATGCCGTCACGATCAATCTCGGCACCGGTTCCGGTTCTT 189
Query 54 GCTCCGGCTCCGATCGTTACCTCTTTAGCCCCAGCAGCGCCGTTGGGACATCAGAATAGG 113
|||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| |
Sbjct 190 GCTCCGGCTCCGATCGTTTCCTCTTTAGTCCCAGCAGCGCCGTCAGGACATCAGAATAAG 249
Query 114 ACAACGCGAATCTTTCCACCGTTAGTGGCGGCTGGAGCCGGCGCCGGTTTCTCTCTCTTC 173
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||
Sbjct 250 ACAACGCGAATCTTTCCACCGTTCGTGGTGGCTGGAGCCGGCGCCGGTTTCTCTCTTTTC 309
Query 174 ATCACTCTCTCCGTCTGTTTCTGCAAATTCAGCCGGAAACGTTCATCACCTCCGGCGGAA 233
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 310 ATCACTCTCTCCGTCTGTTTCTGTAAATTCAGCCGGAAACGTTCATCACCTCCGGCGGAA 369
Query 234 AACGCCTCCTCTTCGCCTCGGAAATCACCGCCACGTGAGTTTTCCTATTCGTCTCTCCGT 293
||||| |||||||||||||||| | | |||||||||||||||| |||||||||||||||
Sbjct 370 AACGCTTCCTCTTCGCCTCGGAGACCGTCGCCACGTGAGTTTTCATATTCGTCTCTCCGT 429
Query 294 CGCGCCACCGGCTCTTTCTCGCCA-GCGAATCGTCTAGGTCAAGGCGGATTCGGCGTCGT 352
||||||||||| ||||||||| || |||||| | |||||||| |||||||| ||||||||
Sbjct 430 CGCGCCACCGGTTCTTTCTCG-CAGGCGAATAGACTAGGTCAGGGCGGATTTGGCGTCGT 488
Query 353 ATTTCGTGGAACTATCTCCGGCGGCGAGAATGTCGCCGTTAAAGTAATGGATTCAGGATC 412
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 489 GTTTCGTGGAACTATCTCCGGCGGCGAGAATGTAGCTGTTAAAGTAATGGATTCAGGATC 548
Query 413 TCTTCAAGGAGAAGGTGAGTTTCAGAACGAGTTGTTCTTCGCCGCCAAGCTTGACTCGCC 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 TCTTCAAGGAGAAGGTGAGTTTCAGAACGAGTTGTTCTTCGCCGCCAAGCTTGACTCGCC 608
Query 473 TCACGTTGTCCCTGTTATTGGCTTCTCTCACGATCGAAAACGACGACGTTTGCTTCTTGT 532
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 609 TCACGTTGTCCCTGTTATTGGTTTCTCTCATGATCGAAAACGACGACGTTTGCTTCTTGT 668
Query 533 TTACAAGCTCATGGACAATGGTAACCTCCAAGACGCGTTGCTTCACCGGAGATGCCCTGA 592
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 669 TTACAAGCTTATGGACAATGGTAATCTCCAAGACGCCTTGCTTCACCGGAGATGCCCTGA 728
Query 593 GCTTATGGATTGGAATCGGAGGTTTTTGGTTGCGGTTAACGTTGCGGATGGGATTGAGCA 652
||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||
Sbjct 729 GCTTATGGATTGGAATCGGAGGTTTTTGGTTGCCGTTAACATTGCCGATGGGATTAAGCA 788
Query 653 CCTTCATAGTCTTGAACCACCTGTGATTCATGGTGATATAAAGCCTAGCAATGTTCTATT 712
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 789 TCTTCATAGTCTTGAACCACCTGTGATTCATGGTGATATTAAGCCTAGCAATGTTCTATT 848
Query 713 GGATAATCTCTTCTCTGCCAAAATCGCTGATTTTGGTCTGGCTAGGTTGAAACCGGAGCA 772
|||| ||||||||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 849 AGATAGTCTCTTCTCTGCCAAAATCGCTGATTTTGGTTTGGCTAGGTTGAAAGCAGAGCA 908
Query 773 AGTGGAGATTACTATAGCGCCGGAGCGTGATGGTGATGGATCTATGGTTGAAGAAGTAGA 832
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 909 AGTGGAGATTAGTGTAGCTCCGGAGCGTGATGGTGATGGATCTATGGTTGAAGAAGTAGA 968
Query 833 CAGTGTGATAACTACTGTGACTGGTTATGAAGATTTTAACTTTGGGTTGGTTGATCAGTC 892
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 GAGTGTGGTAACTACTGTGACTGGTTATGAAGATTTTAACTTTGGGTTGGTTGATCAGTC 1028
Query 893 GCCGG-GAAGTGTTGCTAAGGTTCCTGGGTCTGTGAGTGCTTCGCCGGAGACTG-CGACG 950
|||| || |||||||||||||||||||||||||||||||||| || ||| | | |||||
Sbjct 1029 TCCGGAGA-GTGTTGCTAAGGTTCCTGGGTCTGTGAGTGCTTCTCCTGAGGC-GACGACG 1086
Query 951 GTTGTCTCTGTTTCTCCGGAAATGGGGGAGAAAACGGATGAGGATGGTGGTAATGTGGTG 1010
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 1087 GTTGTCTCTGTTTCTCCGGAAATGGGAGAGAAAACGGATGAGGATGGTGGTAGTGTTGTG 1146
Query 1011 GTGACAAAGAAGGGGAAAGAGACTGAGAGTAGAGATTGGTGGTGGAAGCAGGAGAGCAAT 1070
|||| |||||||||||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 1147 GTGATGAAGAAGGGGAAAGAGAGTGAGAGCAAAGATTGGTGGTGGAAGCAGGAGAGCAAT 1206
Query 1071 GTTGAAAGAGGGAAAGTGAAGGAGTATGTGATGCAATGGATTGGTTCAGAGGTTAAGAAG 1130
||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 1207 GTTGAAAGAGGGAGAGTGAAAGAGTATGTAATGCAATGGATTGGTTCAGAGGTAAAGAAG 1266
Query 1131 GAGAGACCGAGCAGA-GCCGACTGGATTGAGGCGACAGCTTTGTCTTCGTCGTCAAGTAA 1189
|||||||| |||||| | || |||||||||||| ||||||||||||| |||||||||||
Sbjct 1267 GAGAGACCAAGCAGAAGT-GATTGGATTGAGGCGGCAGCTTTGTCTTCTTCGTCAAGTAA 1325
Query 1190 GAAACTTGAGAAGAAGACTAGCAAGAGACTAGAATGGTGGTTGTCACTAGAGGAAGAGGA 1249
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 1326 GAAACTTGAGAAGAAGACTAGCAAGAGACTAGATTGGTGGTTGTCATTGGAGGAAGAGGA 1385
Query 1250 TGAGAAGAATAAGAGGAAGAAGCGGAGGATGGTTAGGGAGTGGTGGAAAGATGAGTATCG 1309
|||||| || |||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1386 TGAGAATAAGAAGAAGAAGAAGCGGAGGATGGTTAGAGAGTGGTGGAAAGATGAGTATCG 1445
Query 1310 TAGAGAACTCGCTaagaaaaagaagaagaagaagaagaCGACTTTAGAAGCTGAATTTTG 1369
|||||||||||||||||||| ||||||||||||||||| |||||||||||| || |||||
Sbjct 1446 TAGAGAACTCGCTAAGAAAAGGAAGAAGAAGAAGAAGATGACTTTAGAAGCCGAGTTTTG 1505
Query 1370 TAGTGATGATGGAAGTAGTAGTGTGAGTCAATGGCGGCGTGGTAGTGGTAGTGGTAGCAG 1429
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 TAGTGATGATGGGAGTAGTAGTGTGAGTCAATGGCGGCGTGGTAGTGGTAGTGGTAGCAG 1565
Query 1430 CATAGATTGGTGGTTAGATGGGTTAAGTGGTGAACGGTGGTCGAGAGCAAGGGGAAATAG 1489
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1566 CATAGATTGGTGGTTAGATGGGTTAAGTGGTGAACGATGGTTGAGAGCAAGGGGAAATAG 1625
Query 1490 CCATGACTCGGTGAGCGGTGAGATAGCTAAGAGCTGCGGAATCAGTAGCACGCCGAGCAT 1549
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1626 CCATGACTCGGTGAGCGGTGAGATAGCTAAGAGCTGCGGAATTAGTAGCACGCCGAGCAT 1685
Query 1550 GAGAGGAACCGTGTGCTATGCAGCGCCTGAGTATTGTAACTTAGAAAACAATGTGTCTGA 1609
|||||| || |||||||||||||| |||||||| |||||||| || ||||| ||||| ||
Sbjct 1686 GAGAGGGACTGTGTGCTATGCAGCTCCTGAGTACTGTAACTTGGACAACAACGTGTCAGA 1745
Query 1610 GAAATGCGATGTCTATAGCTACGGTGTTCTGTTGTTAGTTCTGATTTCCGGGAGGCGCCC 1669
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1746 GAAATGTGATGTCTATAGCTACGGTGTTCTGTTGTTAGTTCTGATTTCCGGGAGGCGCCC 1805
Query 1670 GTTGGAGATGACAGGATCCGCGAGCGAGATCCAAAGGGCAAACCTCATGTCTTGGGCGAG 1729
|||||||||||| || |||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 1806 GTTGGAGATGACGGGCTCCGCGAGTGAGATACAACGGGCAAACCTCATGTCTTGGGCGAG 1865
Query 1730 GAAGCTGGCGAGGAGAGGGAAACTACTTGATCTTGTAGACCAAAAGTTGCAAAATTTAGA 1789
|||| ||||||| ||||| ||||| |||||||||| || |||||||||||||| |||||
Sbjct 1866 GAAGTTGGCGAGAAGAGGAAAACTTGTTGATCTTGTGGATCAAAAGTTGCAAAACTTAGA 1925
Query 1790 CCAAGAACAAGCAGTGTTGTGCATAAAGGTGGCCTTGTTGTGTCTGCAAAGGTTGCCGAT 1849
||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 1926 CCAAGAACAAGCAGTGTTGTGCATAAAGGTGGCTTTGTTGTGTCTGCAAAGATTACCGAT 1985
Query 1850 TTCACGACCGTCAACGAAAGAGGTTTTGGGAATGCTTAAAGGAGAAGTGAATCTACCAGA 1909
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1986 TTCACGACCGTCAATGAAAGAGGTCTTGGGAATGCTTAAAGGAGAAGTGAATCTACCAGA 2045
Query 1910 GTTGCCTACCGAGTTCTCACCATCGCCTCCATTGAAGACGGTGAGGAAGCAGCGCCGTTG 1969
|||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 2046 GTTGCCTAGTGAGTTCTCACCATCGCCACCATTAAAGACAACGAGGAAGCAGCGCCGTTG 2105
Query 1970 ATTAACTTAAGAATCACTTTG 1990
| ||| ||| |||||| ||||
Sbjct 2106 ACTAATTTAGGAATCATTTTG 2126
> AT5G51770.1 | Symbols: | Protein kinase superfamily protein
| chr5:21031030-21032994 FORWARD LENGTH=1965
Length=1965
Score = 529 bits (286), Expect = 5e-149
Identities = 993/1313 (76%), Gaps = 134/1313 (10%)
Strand=Plus/Plus
Query 159 GGTTTCTCTCTCTTCATCACTCTCTCCGTCTGTTTCTGCAAATTCAGCCGGAAACGTTC- 217
||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||| |
Sbjct 115 GGTTTCTCTCTCTTCATAACTCTCTCCATCTGTTTCTGCAAATTCAACCGCAAACG-CCG 173
Query 218 ATC-ACCTCCGGCGGAAAACGCCTCCTCT---TCGCCTCGGAAATC-ACCGCCACGTGAG 272
||| || || || | | | |||||||| |||| | |||| | |||| || |||
Sbjct 174 ATCTCCCGCC-GCCGTAGCCTCCTCCTCTACACCGCCGCAGAAA-CAACCGTTACACGAG 231
Query 273 TTTTCCTATTCGTCTCTCCGTCGCGCCACCGGC-TCTTTCTCGCCAGCGAATCGTCTAGG 331
|| ||||| || ||||||||| |||||| || |||||||| || | |||||| |||||
Sbjct 232 TTCTCCTACTCATCTCTCCGTAAAGCCACC-GCTTCTTTCTCACCGGAGAATCGACTAGG 290
Query 332 TCAAGGCGGATTCGGCGTC-GTATTTCGTGGAAC--TA------T-CTCCGGCGGCGAG- 380
|||||||||||||||| || ||||| |||||||| || | |||||| || | |
Sbjct 291 TCAAGGCGGATTCGGC-TCTGTATTCCGTGGAACTTTATCTCCTTCCTCCGGTGGTG-GT 348
Query 381 AATGTCGCCGTTAAAGTAATGGATTCAGGATCTCTTCAAGGAGAAGGTGAGTTTCAGAAC 440
||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||
Sbjct 349 AATGTCGCCGTTAAAGTAATGGATTCAGGTTCTCTTCAAGGAGAAAGAGAGTTTCAAAAC 408
Query 441 GAG-TTGTTCTTCGCCGCCAAGCTTGACTCGCCTCACGTTGTC-CCTGTTATTGGCTTCT 498
||| || |||||||| | |||||||| || ||||| || || || |||||||||||||
Sbjct 409 GAGCTT-TTCTTCGCTGGTAAGCTTGATTCTCCTCATGTAGTTTCC-GTTATTGGCTTCT 466
Query 499 CTC-ACGATCGAAAACGACGACGTTTGCTTCTTGTTTACAAGCTCATGGACAATGGTAAC 557
||| |||| ||| ||| | |||||| ||||||| ||| |||| ||||| | ||| ||
Sbjct 467 CTCGACGA-CGA---CGAAGCCGTTTGATTCTTGTATACGAGCTTATGGATATTGGAAAT 522
Query 558 CTCCAAGACGCG-TTGCTTCACCGGAGATGC-CCTGAGCTTATGGAT-TGGAATCGGAGG 614
|| ||||| || || ||||| || |||| | |||||||||||| || |||||||| ||
Sbjct 523 CTTCAAGATGCTCTT-CTTCATCGTAGAT-CTCCTGAGCTTATG-ATATGGAATCGAAGA 579
Query 615 TTTTTGGTTGCGGTTAACGTTGCGGATGGGATTGAGCACCTT-CATAGTCTTGAA-CCAC 672
||| | |||||| || | | || | |||||||| || || ||||| |||||| ||
Sbjct 580 TTTCTCGTTGCGATTGATATAGCTAAAGGGATTGAACAT-TTACATAG-CTTGAATCCTT 637
Query 673 CTGTGATTCATGGTGATAT-AAAGCCTAGCAATGT-TCTATTGGATA-ATCTCTTCTCTG 729
|||||||||||| ||| | ||| ||||| ||||| | | |||||| || |||||||||
Sbjct 638 GTGTGATTCATGGAGATTTGAAA-CCTAGTAATGTAT-TGTTGGATCGAT-TCTTCTCTG 694
Query 730 CCAAAATCGCTGATTTTGGTCTGGCTAGGTTGAAACCGGAGCAAGTGGA-GATTACTA-T 787
| || ||| ||||||||||| | |||||||||||| | || || || || | ||| | |
Sbjct 695 CTAAGATCTCTGATTTTGGTTTAGCTAGGTTGAAATCTGAACATGTTGAAG-TTAA-AGT 752
Query 788 AGCGCCGGAGCGTGATG--GTG-A---T---GGATCTATGGTTGAAGAAGTAGACAGTGT 838
|| | | ||| |||||| ||| | | || ||| | ||||||||||| || |||||
Sbjct 753 AGTGTCTGAGAGTGATGTAGTGGAAGATTATGGTTCTGTAGTTGAAGAAGTTGAGAGTGT 812
Query 839 -GATAACTACTG-TGACTGGTTATGAAGATTTTAACTTTGGGTTGGTTGATCAGTCGCCG 896
| || ||| | | ||||||| ||| || | ||||||||| || ||||||||| |||
Sbjct 813 TGTTA-CTAATACT-ACTGGTTGTGATGAATCTAACTTTGGATTCACTGATCAGTCTCCG 870
Query 897 G-GAAGTGTTGCTAAGGTTCCTGG-G-TC-TGT-G-AG-TGC-T-TCGCCGGAGACTGC- 946
| | | || | | | || || | | || | || ||| | | | || || |
Sbjct 871 GTGCC-TCTTTC-ATCG--CC-GGAGATGGTGGAGCAGGTGCCTAT-GACGTC-ACCGGA 923
Query 947 GACGGTTGTCTCTGTTTCTCCGGAAATGGGGGAGAAAACGGATGAGGATGGTGGTAATGT 1006
||| ||||| || ||||||||||| |||||||||||| ||| | | || ||| | ||
Sbjct 924 GACAGTTGTATCGGTTTCTCCGGAGATGGGGGAGAAA--GGAAGTG--TGTTGG-AG-GT 977
Query 1007 GGTGGTGACAAAGAAGGGGAAAGAGACTGAGAGTAGAGATTGGTGGTGGAAGCAGGA-GA 1065
|||| | | | || || ||| | | | ||| ||||||||||||||| || |
Sbjct 978 --TGGT-A-AT-GT-GGTGAG-GAG--T-A-A--AGA--TTGGTGGTGGAAGCAAGAAGG 1022
Query 1066 GCAATGTTGAAAGAGGGAAAGTGAAGGAGTATGTGATGCAATGGATTGGTTCAGAGGTTA 1125
| ||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| |
Sbjct 1023 G-AATGTTGGAAGAGGGAAAGGGAAGGAGTATGTGATGCAATGGATTGGTTCTGAGGTGA 1081
Query 1126 AG-AAGGAGAGACCGAGCAGAGCCGACTGGATTGAGGCGACAGCTTTGTCTTCGTCGTCA 1184
|| ||| |||||| ||| || | | ||||||| | ||| || | | ||
Sbjct 1082 AGGAAG-AGAGACAGAGTAGTG---ATTGGATTGCTGAGACGGCG--GAAG--G-CG--- 1129
Query 1185 AGTAAGAAACTTGAGAAGAAGAC---TAGCAAGAGACTAGAATGGTGG-TTGTCACTAGA 1240
|||||||| |||||||||||| ||| |||||| ||||||||||| || || | ||
Sbjct 1130 -GTAAGAAAGTTGAGAAGAAGAAGAGTAGTAAGAGATTAGAATGGTGGCTT-TCGTTGGA 1187
Query 1241 GGAAGAGGATGAGAAGAATAAGAGGAAGAAGCGGAGGATGGTTAGGGAGTGGTGGAAAGA 1300
|||||| | |||||| |||| |||||||||||| ||||| || ||||||||||||||
Sbjct 1188 TGAAGAGAAGGAGAAGGGGAAGAAGAAGAAGCGGAGAATGGTGAGAGAGTGGTGGAAAGA 1247
Query 1301 TGAGTATCGTAGAGAACTCGCTaaga-aa--aagaagaagaagaagaagaCGACTTTAGA 1357
||||||| | | ||| || ||||||| || ||||||||||||||||||| ||||| ||
Sbjct 1248 TGAGTATAGGAAAGAGCTTGCTAAGAGAATGAAGAAGAAGAAGAAGAAGAAAACTTTGGA 1307
Query 1358 AG-CTGAATTTTGTAGTGATGATG-GAAGTAGTAGTGTG-AGTCAATGGCGGC 1407
| |||| |||| ||||||||||| || || | |||||| | |||| ||||||
Sbjct 1308 -GTCTGAGTTTTATAGTGATGATGTGA-GTGGAAGTGTGGA-TCAAAGGCGGC 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98593870380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5