BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945551

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G25380.1 | Symbols: SAP10 | stress-associated protein 10 | c...   549    8e-156


> AT4G25380.1 | Symbols: SAP10 | stress-associated protein 10 | 
chr4:12975936-12976328 REVERSE LENGTH=393
Length=393

 Score =  549 bits (297),  Expect = 8e-156
 Identities = 339/359 (94%), Gaps = 4/359 (1%)
 Strand=Plus/Plus

Query  78   GGCTGTGGACTCTACGG-AGCCCGAAAGAACAACAATCTATGCTCTCTCTGCTACAAACA  136
            ||||||||||||||||| | |||||  ||||||||||||||||||||||||||||||| |
Sbjct  37   GGCTGTGGACTCTACGGCA-CCCGAGTGAACAACAATCTATGCTCTCTCTGCTACAAAAA  95

Query  137  CAGTGTTCTTCAACACTCGACCGCTTTAAGATTCGAACCCGAGATCGAGCAATCACAGTG  196
             |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct  96   GAGTGTTCTTCAACACTCGCCCGCTTTAAGATTCGAACCCGAGACCGAGCAATCACAGTG  155

Query  197  TTGCCCTCTTAC-AAGTAGTCCCGTCGCTGAAGAAGAACCGGTCAGAAAAAGGAGATGTG  255
            |||||||| ||| || |||||||| || ||||||||||||||||| ||||||||||||||
Sbjct  156  TTGCCCTCCTACGAA-TAGTCCCGCCGTTGAAGAAGAACCGGTCAAAAAAAGGAGATGTG  214

Query  256  GGATATGTAAGAGGAAGGTAGGAATGTTGGCATTCAACTGTAGATGCGGACACATGTTTT  315
            |||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct  215  GGATATGTAAGAGGAAGGTAGGAATGTTGGGATTCAAGTGTAGATGTGGACACATGTTTT  274

Query  316  GCGGGTCACATCGGTATCCGGAGGAGCATTCGTGTCCCTTTGATTACAAACAATCTGGAC  375
            ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  275  GCGGGTCACATCGTTATCCGGAGGAGCATTCTTGTCCCTTTGATTACAAACAATCTGGAC  334

Query  376  GGCTCGCCTTGGCCACACAGTTGCCTTTGAACAGAGCTGACAAGTTGCAGAGGTTTTAG  434
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  335  GGCTCGCCTTGGCCACACAGTTGCCTTTGATCAGAGCTGACAAGTTGCAGAGGTTTTAG  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21665399819


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5