BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945556
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25360.1 | Symbols: TBL18 | TRICHOME BIREFRINGENCE-LIKE 18 |... 2481 0.0
AT5G51640.1 | Symbols: YLS7, TBL17 | Plant protein of unknown f... 935 0.0
> AT4G25360.1 | Symbols: TBL18 | TRICHOME BIREFRINGENCE-LIKE 18
| chr4:12969577-12972644 FORWARD LENGTH=2215
Length=2215
Score = 2481 bits (1343), Expect = 0.0
Identities = 1524/1609 (95%), Gaps = 21/1609 (1%)
Strand=Plus/Plus
Query 3 TCTACTAGTGAACCTGCCATGGCTTTTGGTTCTCCTAGG---AATTCTATATTAGCTGCG 59
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 356 TCTACTAGTGAAGAAACCATGGCTTTTGGTTCTCCTAGGAATAATTCTATATTAGCTGCG 415
Query 60 GCTGGATTTCCTCGGAAAGTGTCTACTGTTGCAATTGCTATTGGCGGATTGGCTTCATTC 119
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||
Sbjct 416 GCTGGATTTCCTCGGAAAGTGTCTACAGTTGCAATTGCTATTGGTGGTTTGGCATCATTC 475
Query 120 TTTGTTTTCGGATTGTTGCTTCGTCTTTCGTATCCGAATAGTTCTTCAGTTAGTGGCATA 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 476 TTTGTTTTCGGATTGTTGCTTCGTCTTTCGTATCCGAATAGTTCTTCAGTTGGTGGCATA 535
Query 180 TTTTATGGGATAGGGAATCCTGAACAAGTTCATGTCCCTTTATCTTTGAGCAACCATACC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TTTTATGGGATAGGGAATCCTGAACAAGTTCATGTCCCTTTATCTTTGAGCAACCATACT 595
Query 240 GTAAAAATCCTTCAGAAGAGTAGTGACATCAATGCGTTTGATAAAAATCTGACTTCTGAT 299
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GTCAATATCCTTCAGAAGAGTAGTGACATCAATGCGTTTGATAAAAATCTGACTTCTGAT 655
Query 300 TCCAGCTCAGGCTCAACC-CATGTTGTTAGCAAAAACATACAACCGCCAGATTTCGA-TA 357
|| ||||| |||| ||| |||||||||||||| |||| ||| ||||||||| | ||
Sbjct 656 TCTAGCTCTGGCT-TACCTGTTGTTGTTAGCAAAAGTATACCACCTCCAGATTTC-AGTA 713
Query 358 GTGATAGGAAGTTGGAGACACCTTTGACACAAGAAAAAGAGGATTCCGTTTCTTCGGATA 417
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 714 GTGATAGGAAGTTGGAGACACCTTTGACACAAGAAAAAGAGGATTTGGTTTCTTCGGATA 773
Query 418 TAAC----ACCATTGACTGTTCAATCAGGTGAAGGTG------ATGTTTCCAAGGCTGAA 467
|||| | | ||| |||||||||||||||| ||| |||||||||||||||||
Sbjct 774 TAACTGAAAAGACTGA-TGTTCAATCAGGTGAACGTGAAACCAATGTTTCCAAGGCTGAA 832
Query 468 GACACTATAAGTGCATCATCTCCTCCACATGATGACTCTGAAACTGCTTCAGCAGAGCCA 527
|||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| |||
Sbjct 833 GACACTCCAAGTGCATCATCTCCTCCAGATGATGTCTCTGAAACTGCTTCAGCAGAACCA 892
Query 528 GAGTGTGATTTGTATCAAGGTAGTTGGTTTTATGATCCTGGGGGACCTCTGTACACGAAC 587
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 893 GAGTGTGATTTGTATCAAGGTAGTTGGTTTTATGATCCTGGGGGACCTCTCTACACGAAC 952
Query 588 AACTCTTGCCCTGTCCTGACACAGATGCAGAATTGCCAGGGCAATGGAAGACCTGATAAG 647
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 953 AACTCTTGCCCTGTCCTGACGCAGATGCAGAATTGCCAGGGAAATGGAAGACCTGACAAG 1012
Query 648 GGATATGAGAACTGGAGATGGAAACCGTCTCAGTGTGACCTTCCACGGTTTGATGCCAGG 707
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1013 GGATATGAGAACTGGAGATGGAAACCGTCTCAGTGTGAGCTTCCTCGGTTTGATGCCAGA 1072
Query 708 AAATTTCTTGAACTAATGAAAGGCAAGACACTGGCCTTTATAGGAGATTCAGTAGCTCGT 767
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AAATTTCTTGAACTTATGAAAGGCAAGACACTGGCCTTTATAGGAGATTCAGTAGCTCGT 1132
Query 768 AATCAGATGGAGTCCATGTTGTGCCTTCTTTGGCAGGTTGAAACACCAGTCAATCGTGGG 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 AATCAGATGGAGTCCATGTTGTGCCTTCTTTGGCAGGTTGAAACACCAGTCAATCGTGGG 1192
Query 828 AGCCGAAAGATGCAGAGATGGTATTTTAAGTCA-TCATCAGTAATGATTGCCCGTATTTG 886
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1193 AGCCGAAAGATGCAGAGATGGTATTTTAAG-CAATCATCAGTAATGATTGCCCGTATTTG 1251
Query 887 GTCATCTTGGCTTGTTCATCAGTTCAACGAAAAATTTGATTATGCTCCTGAAGGTGTCAC 946
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1252 GTCATCTTGGCTTGTTCATCAGTTCAACGAAAAATTCGATTATGCTCCTGAAGGTGTCAC 1311
Query 947 AAAACTAAAGCTGGATCTTCCTGATGAGCGCATAATGGAAGCTATCCCGAAATTCGACGT 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AAAACTAAAGCTGGATCTTCCTGATGAGCGCATAATGGAAGCTATCCCGAAATTCGACGT 1371
Query 1007 GGTTGTCCTCTCATCAGGACACTGGTTCGCAAAGCAGTCGGTCTACATATTGAAGGACGA 1066
|||||||||||||||||| |||||||| ||||||||||| |||||||||||||| || ||
Sbjct 1372 GGTTGTCCTCTCATCAGGGCACTGGTTTGCAAAGCAGTCTGTCTACATATTGAAAGAAGA 1431
Query 1067 GATCGTGGGAGGCCAATTATGGTGGCCAGACAAATCAAAACCCATGAAAGTCAATAACGT 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GATCGTGGGAGGCCAATTATGGTGGCCAGACAAATCAAAACCCATGAAAGTCAATAACGT 1491
Query 1127 GGATGCATTTGGAATATCAGTTGAAACAATCCTAAAGTCCATGGCTACACACCCGAACTA 1186
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1492 GGATGCATTTGGAATATCAGTTGAAACAATCCTTAAGTCCATGGCTACACACCCGAACTA 1551
Query 1187 CAGCGGTTTGACCATTGTGAGAACATTCTCACCTGATCACTACGAGGGCGGTGCTTGGAA 1246
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1552 CAGCGGTTTGACCATTGTGAGAACATTCTCACCTGATCATTACGAAGGTGGTGCTTGGAA 1611
Query 1247 CACAGGTGGTTCATGCACGGGGAAAGAAGAACCCATCCTTCCAGGGAAGCTAGTGAAAAA 1306
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 CACAGGTGGATCATGCACGGGGAAAGAAGAACCCATCCTTCCAGGGAAGCTAGTGAAAAA 1671
Query 1307 CGGATTCACAGAGATAATGCACGAGAAGCAAGCGACAGGATATAACCTAGCTGTTGATAA 1366
||||||||||||||||||||| ||||||||||||||||||||||||| ||| || |||||
Sbjct 1672 CGGATTCACAGAGATAATGCATGAGAAGCAAGCGACAGGATATAACCAAGCCGTCGATAA 1731
Query 1367 AGTCGCGGAGAATTTGAAGCTTAAATTAAAGCTGATGGATATCACAGAGGCTTTTGGATA 1426
||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 1732 AGTCGCGGAGAATTTGAAGCTAAAACTAAAGCTGATGGATATCACAGAGGCATTTGGATA 1791
Query 1427 TCGACATGATGGTCATCCTGGTCCATACAGGAGTCCTGACCCGAACAAGATCACTAAACG 1486
||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 1792 TCGCCATGATGGTCATCCTGGTCCATTCAGAAGTCCTGACCCTAACAAGATCACTAAACG 1851
Query 1487 GGGACCAGACGGACGGCCTCCACCTCAGGACTGCTTGCACTGGTGCATGCCGGGACCAGT 1546
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1852 GGGACCAGACGGACGGCCTCCACCTCAGGACTGCTTGCACTGGTGCATGCCAGGACCAGT 1911
Query 1547 GGATACATGGAACGAAATGGTCTTGGAGCTCATAAGGAGAGACAAGGAA 1595
||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1912 CGATACATGGAACGAAATGGTCTTGGAGCTCATAAGGAGAGACA-GGAA 1959
Score = 69.4 bits (37), Expect = 1e-10
Identities = 40/41 (98%), Gaps = 1/41 (2%)
Strand=Plus/Plus
Query 1605 AGGAAAAGCTCATCAACTTGACTTGGTTTGAAAACTCAAAG 1645
||||||||||||||||||||||||||||||||| |||||||
Sbjct 1955 AGGAAAAGCTCATCAACTTGACTTGGTTTGAAA-CTCAAAG 1994
> AT5G51640.1 | Symbols: YLS7, TBL17 | Plant protein of unknown
function (DUF828) | chr5:20975180-20977625 REVERSE LENGTH=1830
Length=1830
Score = 935 bits (506), Expect = 0.0
Identities = 896/1082 (83%), Gaps = 35/1082 (3%)
Strand=Plus/Plus
Query 526 CAGAGTGTGATTTGTATCAAGGTAGTTGGTTTTATGATCCTG-GGGGACC-TCTGTACAC 583
|||| |||||||| ||||| |||| |||||||||||||| | |||||| | |||| ||
Sbjct 510 CAGAATGTGATTTATATCATGGTAACTGGTTTTATGATCC-GATGGGACCGT-TGTATAC 567
Query 584 GAACAACTCTTGCCCTGTCCTGACACAGATGCAGAATTGCCAGGGCAATGGAAGACCTGA 643
||||||||||| ||| | ||||||||||||| || || ||||||||||||||||||||
Sbjct 568 AAACAACTCTTGTCCTCTTTTGACACAGATGCAAAACTGTCAGGGCAATGGAAGACCTGA 627
Query 644 TAAGGGATATGAGAACTGGAGATGGAAACCGTCTCAGTGTGACCTTCCACGGTTTGATGC 703
||||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 628 CAAGGGGTATGAAAACTGGAGATGGAAACCGTCTCAGTGTGATCTTCCGCGTTTTGATGC 687
Query 704 CAGGAAATTTCTTGAACTAATGAAAGGCAAGACACTGGCCTTTATAGGAGATTCAGTAGC 763
| |||||||||||| ||||||| |||||||||||| || |||||||| |||||||||||
Sbjct 688 TAAGAAATTTCTTGAGCTAATGAGAGGCAAGACACTAGCTTTTATAGGCGATTCAGTAGC 747
Query 764 TCGTAATCAGATGGAGTCCATGTTGTGCCTTCTTTGGCAGGTTGAAACACCAGTCAATCG 823
|||||||||||||||||||||| |||| |||||||||||||| ||||| || || || ||
Sbjct 748 TCGTAATCAGATGGAGTCCATGATGTGTCTTCTTTGGCAGGTAGAAACTCCGGTTAACCG 807
Query 824 TGGGAGCCGAAAGATGCAGAGATGGTATTTTAAGTCATCATCAGTAATGATTGCCCGTAT 883
||||| | | |||||||||||||||||||| | ||||||||| || ||||| || || ||
Sbjct 808 TGGGAACAGGAAGATGCAGAGATGGTATTTCAGGTCATCATCGGTGATGATAGCTCGGAT 867
Query 884 TTGGTCATCTTGGCTTGTTCATCAGTTCAACGAAAAATTTGATTATGCTCCTGAAGGTGT 943
|||||||||||||| || ||||||||||| ||| |||| || |||| | || |||||
Sbjct 868 GTGGTCATCTTGGCTGGTCCATCAGTTCAATGAACCGTTTGGTTTTGCTACAGATGGTGT 927
Query 944 CACAAAACTAAAGCTGGATCTTCCTGATGAGCGCATAATGGAAGCTATCCCGAAATTCGA 1003
|| ||||| ||||| || | || |||||||||||||| |||||| | ||||| |||||
Sbjct 928 AACTAAACTCAAGCTTGACCAACCCGATGAGCGCATAATTGAAGCTCTTCCGAATTTCGA 987
Query 1004 CGTGGTTGTCCTCTCATCAGGACACTGGTTCGCAAAGCAGTCGGTCTACATATTGAAGGA 1063
|||||||| || |||||||| |||||||| ||||| ||||| ||||| || || || ||
Sbjct 988 TGTGGTTGTACTTTCATCAGGTCACTGGTTTGCAAAACAGTCTGTCTATATTTTAAATGA 1047
Query 1064 CGAGATCGTGGGAGGCCAATTATGGTGGCCAGACAAATCAAAACCCATGAAA-G-TCAAT 1121
| |||| ||||||||||| ||||||||||||||||||||||||||| |||| | | ||
Sbjct 1048 CCAGATTGTGGGAGGCCAGTTATGGTGGCCAGACAAATCAAAACCC--GAAAAGATTAAC 1105
Query 1122 AACGTGGATGCATTTGGAATATCAGTTGAAACAATCCTAAAGTCCATGGCTACACACCCG 1181
||||| || |||||||| || || || ||||||||| ||||| | ||||||| ||||||
Sbjct 1106 AACGTCGAAGCATTTGGGATCTCTGTAGAAACAATCATAAAGGCAATGGCTAAACACCCA 1165
Query 1182 AACTACAGCGGTT-TGACCAT-TGTGA-GAACATTC-TCACCTGATCACTACGAGGGCGG 1237
||||||| ||| | ||||||| | | | | || || || |||||||| || || |||||
Sbjct 1166 AACTACA-CGGGTCTGACCATCT-T-ACGTAC-TTGGTCGCCTGATCATTATGAAGGCGG 1221
Query 1238 TGCTTGGAACACAGGTGGTTCATGCACGGGGAAAGAAGAACC-CATCCTTCCAGGGAAGC 1296
||| |||||||| ||||| |||||||| || |||| ||| || | |||| || |||||
Sbjct 1222 TGCGTGGAACACTGGTGGATCATGCACAGGTAAAGTAGAGCCGCTTCCT-CCTGGGAATT 1280
Query 1297 TAGTGAAAAACGGATTCACAGAGATAATGCACGAGAAGCAAGCGACAGGATATAACC-TA 1355
|||| | |||||| ||||||||||||||||||||||||||||| ||||| | | ||| |
Sbjct 1281 TAGTTACAAACGGGTTCACAGAGATAATGCACGAGAAGCAAGCAACAGGGTTTCACCGT- 1339
Query 1356 GCTGTTG---AT-A-AAGTCGCGGAGAATTTGAAGCTTA-AAT-TAAAGCTGATGGATAT 1408
||||| | || | ||| | ||| |||| || | | || | ||||| ||||||||
Sbjct 1340 GCTGTCGCGGATGATAAG-CTCGG-GAATA-GAT-CGAAGAAGCTGAAGCTAATGGATAT 1395
Query 1409 CACAGAGGCTTTTGGATATCGACATGATGGTCATCCTGGTCCATACAGGAGTCCTGACCC 1468
||| |||||||| || ||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1396 CACTGAGGCTTTCGGGTATCGCCACGACGGTCATCCTGGTCCATACAGGAGTCCTGACCC 1455
Query 1469 GAACAAGATCACTAAACGGGGACCAGACGGACGGCCTCCACCTCAGGACTGCTTGCACTG 1528
||| |||||||| ||||| ||||||||||| | |||||| || || ||||| ||||| ||
Sbjct 1456 GAAAAAGATCACAAAACGTGGACCAGACGGTCAGCCTCCTCCACAAGACTGTTTGCATTG 1515
Query 1529 GTGCATGCC-GGGACCAGTGGATACATGGAACGAAATGGT-CTTGGAGCTCATAAGGAGA 1586
||||||||| ||| |||||||| ||||||||||| ||||| || |||| | || ||||||
Sbjct 1516 GTGCATGCCAGGG-CCAGTGGACACATGGAACGAGATGGTTCT-GGAGATTATTAGGAGA 1573
Query 1587 GA 1588
||
Sbjct 1574 GA 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81274682355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5