BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945561 Length=1255 Score E Sequences producing significant alignments: (Bits) Value AT4G25320.1 | Symbols: | AT hook motif DNA-binding family prot... 1965 0.0 AT5G51590.1 | Symbols: | AT hook motif DNA-binding family prot... 422 5e-117 > AT4G25320.1 | Symbols: | AT hook motif DNA-binding family protein | chr4:12954077-12956543 FORWARD LENGTH=1827 Length=1827 Score = 1965 bits (1064), Expect = 0.0 Identities = 1206/1270 (95%), Gaps = 27/1270 (2%) Strand=Plus/Plus Query 1 TCACTTGATCTTATGTCCGGATGGAGGAGAGAGAAGGAACcaacaacaacaacaaca-ca 59 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 392 TCACTTGATCTTATGTCCGGATGGAGGAGAGAGAAGGAACCAACATCAACAACAACATCA 451 Query 60 --aGCAGTTTCGGCTTG-A--AGCAACATGAAGCTACTGCTTCTGATGGTGGTTACTCAA 114 ||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| Sbjct 452 CTAGCAGTTTCGGCTTGAAGCAGCAACATGAAGCTGCTGCTTCTGATGGTGGTTACTCAA 511 Query 115 TGGACCCACCACCACGACCCGAAAACCCTAACCCGTTTTTAGGCCAACCCACCACTGTAT 174 |||||||||||||| ||||||||||||||||||||||||||| || |||||| ||||| Sbjct 512 TGGACCCACCACCAAGACCCGAAAACCCTAACCCGTTTTTAGTCCCACCCACTACTGTCC 571 Query 175 CCGCCGCCGCCACCGTTGCAGC--C-GTTACTGAGAATGCGGCTACTCCGTTTAGCTTAA 231 |||| ||||||||||| ||||| | |||||||||||||||||||||||||||||||||| Sbjct 572 CCGCGGCCGCCACCGTAGCAGCAGCTGTTACTGAGAATGCGGCTACTCCGTTTAGCTTAA 631 Query 232 CAATGCCGGCGGAGAACACTTCCTCTGAGCAGCTGAAAAAGAAGAGAGGTAGGCCGAGAA 291 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 632 CAATGCCGACGGAGAACACTTCAGCTGAGCAGCTGAAAAAGAAGAGAGGTAGGCCGAGAA 691 Query 292 AGTATAATCCCGATGGGACTCTCGCCGTGACTCTATCGCCGATGCCAATCTCATCCTCGG 351 |||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||||| | Sbjct 692 AGTATAATCCCGATGGGACTCTTGTCGTGACTTTATCGCCGATGCCAATCTCGTCCTCTG 751 Query 352 TGCCGTTGACGTCGGAGTTTCCTCCAAGGAAACGAGGAAGAGGACGTGGCAAGTCTAATC 411 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 752 TTCCGTTGACGTCGGAGTTTCCTCCAAGGAAACGAGGAAGAGGACGTGGCAAGTCTAATC 811 Query 412 GATGGCTCAAGAAGTCTCAAATGTTTCAATTCGATAGAAGTCCTGTTGATACCAATTTGG 471 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 812 GATGGCTCAAGAAGTCTCAAATGTTCCAATTCGATAGAAGTCCTGTTGATACCAATTTGG 871 Query 472 CAGGTGTAGGAACTGCTGATTTTGTTGGTGCCAACTTTACTCCTCATGTACTGATCGTCA 531 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 872 CAGGTGTAGGAACTGCTGATTTTGTTGGTGCCAACTTTACACCTCATGTACTGATCGTCA 931 Query 532 ACGCCGGAGAGGATGTGACGATGAAGATAATGACATTCTCTCAACAAGGATCTCGTGCTA 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 932 ACGCCGGAGAGGATGTGACGATGAAGATAATGACATTCTCTCAACAAGGATCTCGTGCTA 991 Query 592 TCTGCATCCTTTCAGCTAATGGTCCCATCTCCAATGTTACTCTTCGTCAATCTATGACAT 651 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 992 TCTGCATCCTTTCAGCTAATGGTCCCATCTCCAATGTTACGCTTCGTCAATCTATGACAT 1051 Query 652 CCGGCGGTACTCTAACTTATGAGGGTCGTTTTGAGATTCTCTCTTTGACTGGTTCGTTTA 711 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1052 CCGGTGGTACTCTAACTTATGAGGGTCGTTTTGAGATTCTCTCTTTGACGGGTTCGTTTA 1111 Query 712 TGCAAAATGACTCTGGGGGAACTCGAAGTAGAGCTGGTGGTATGAGTGTTTGCCTTGCAG 771 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1112 TGCAAAATGACTCTGGAGGAACTCGAAGTAGAGCTGGTGGTATGAGTGTTTGCCTTGCAG 1171 Query 772 GACCAGATGGTCGTGTCTTTGGTGGAGGACTCGCTGGTCTCTTTCTTGCTGCTGGTCCTG 831 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1172 GACCAGATGGTCGTGTCTTTGGTGGAGGACTCGCTGGTCTCTTTCTTGCTGCTGGTCCTG 1231 Query 832 TCCAGGTAATGGTAGGGACTTTTATAGCTGGTCAAGAGCAGTCACAGCTGGAGCTAGCAA 891 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1232 TCCAGGTAATGGTAGGGACTTTTATAGCTGGTCAAGAGCAGTCACAGCTGGAGCTAGCAA 1291 Query 892 AAGAAAGACGGCTAAGATTTGGGGCTCAACCATCTTCTATCTCCTTTAACATATCTGCAG 951 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1292 AAGAAAGACGGCTAAGATTTGGGGCTCAACCATCTTCTATCTCCTTTAACATATCCGCAG 1351 Query 952 AAGAACGGAAGGCGAGATTCGAGAGGCTTAACAAGTCTGTTGCTATTCCTGCACCAACTA 1011 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1352 AAGAACGGAAGGCGAGATTCGAGAGGCTTAACAAGTCTGTTGCTATTCCTGCACCAACCA 1411 Query 1012 CTTCGTACACGCATGTAAACACAACAAATGCGGTTCACAGTTACTACACAAACTCGGTTA 1071 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1412 CTTCATACACGCATGTAAACACAACAAATGCGGTTCACAGTTACTATACAAACTCGGTTA 1471 Query 1072 ACCACGTCAAGGATCCCTTCTCGTCGTCCATCCCAGTaggaggaggagt---tggagagg 1128 |||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| Sbjct 1472 ACCATGTCAAGGATCCCTTCTCGTC-T--ATCCCAGTAGGAGGAGGAGGAGGTGGAGAGG 1528 Query 1129 taggtgaagaggaaggcgaggaagatgaagaagatgaggatgaattagaaggtgaggagg 1188 |||| ||||| | | ||| | |||||||||||| ||||||||||||||||| || | Sbjct 1529 TAGGAGAAGA--A-G---AGG--G-TGAAGAAGATGATGATGAATTAGAAGGTGAAGACG 1579 Query 1189 aagaaTTCGGAGGCGATAGCCAATCTGACAATGAGATTCCGAGCTGATGATC--C-TACG 1245 ||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| Sbjct 1580 AAGAATTCGGAGGCGATAGCCAATCTGACAACGAGATTCCGAGCTGATGATGATCATACG 1639 Query 1246 GTTTCTTTTC 1255 |||||||||| Sbjct 1640 GTTTCTTTTC 1649 > AT5G51590.1 | Symbols: | AT hook motif DNA-binding family protein | chr5:20956567-20959113 REVERSE LENGTH=1740 Length=1740 Score = 422 bits (228), Expect = 5e-117 Identities = 354/415 (85%), Gaps = 7/415 (2%) Strand=Plus/Plus Query 479 AGGAACTGCTGATTTTGTTGGTGCCAA-CTTTACTCCTCATGTACTGATC-GTCAACGCC 536 |||| ||||||| |||| || |||| ||||| |||||||| || | | || || ||| Sbjct 688 AGGACCTGCTGAAATTGTCAGT-CCAAGTTTTACACCTCATGTGCTCA-CAGTAAATGCC 745 Query 537 GGAGAGGATGTGACGATGAAGATAATGACATTCTCTCAACAAGGATCTCGTGCTATCTGC 596 || ||||||||||| ||||||||||||||||||||||||||||| || |||||||| || Sbjct 746 GGTGAGGATGTGACAATGAAGATAATGACATTCTCTCAACAAGGCTCGCGTGCTATTTGT 805 Query 597 ATCCTTTCAGCTAATGGTCCCATCTCCAATGTTACTCTTCGTCAATCTATGACATCCGGC 656 || |||||||| || |||||||| ||||||||||| |||||||||||||||||||| || Sbjct 806 ATTCTTTCAGCGAACGGTCCCATATCCAATGTTACACTTCGTCAATCTATGACATCTGGT 865 Query 657 GGTACTCTAACTTATGAGGGTCGTTTTGAGATTCTCTCTTTGACTGGTTCGTTTATGCAA 716 |||||||| ||||||||||||| |||||||||||| |||||||| ||||||||||| | | Sbjct 866 GGTACTCTCACTTATGAGGGTCATTTTGAGATTCTTTCTTTGACGGGTTCGTTTATACCA 925 Query 717 AATGACTCTGGGGGAACTCGAAGTAGAGCTGGTGGTATGAGTGTTTGC-CTTGCAGGACC 775 | || ||| ||||| ||||| ||||||||||| |||||||| | | |||||||||| Sbjct 926 AGCGAGAGTGGAGGAACCCGAAGCAGAGCTGGTGGGATGAGTGTCT-CTCTTGCAGGACA 984 Query 776 AGATGGTCGTGTCTTTGGTGGAGGACTCGCTGGTCTCTTTCTTGCTGCTGGTCCTGTCCA 835 ||||||||||||||||||||| ||||| |||||||||||| |||| ||||||||||| || Sbjct 985 AGATGGTCGTGTCTTTGGTGGTGGACTTGCTGGTCTCTTTATTGCCGCTGGTCCTGTTCA 1044 Query 836 GGTAATGGTAGGGACTTTTATAGCTGGTCAAGAGCAGTCACAGCTGGAGCTAGCA 890 |||||||||||||| ||||||||| ||||| ||| | || |||| | ||| |||| Sbjct 1045 GGTAATGGTAGGGAGTTTTATAGCGGGTCAGGAGGAATCGCAGCAGCAGC-AGCA 1098 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61696469805 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5