BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945561
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25320.1 | Symbols: | AT hook motif DNA-binding family prot... 1965 0.0
AT5G51590.1 | Symbols: | AT hook motif DNA-binding family prot... 422 5e-117
> AT4G25320.1 | Symbols: | AT hook motif DNA-binding family protein
| chr4:12954077-12956543 FORWARD LENGTH=1827
Length=1827
Score = 1965 bits (1064), Expect = 0.0
Identities = 1206/1270 (95%), Gaps = 27/1270 (2%)
Strand=Plus/Plus
Query 1 TCACTTGATCTTATGTCCGGATGGAGGAGAGAGAAGGAACcaacaacaacaacaaca-ca 59
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 392 TCACTTGATCTTATGTCCGGATGGAGGAGAGAGAAGGAACCAACATCAACAACAACATCA 451
Query 60 --aGCAGTTTCGGCTTG-A--AGCAACATGAAGCTACTGCTTCTGATGGTGGTTACTCAA 114
||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct 452 CTAGCAGTTTCGGCTTGAAGCAGCAACATGAAGCTGCTGCTTCTGATGGTGGTTACTCAA 511
Query 115 TGGACCCACCACCACGACCCGAAAACCCTAACCCGTTTTTAGGCCAACCCACCACTGTAT 174
|||||||||||||| ||||||||||||||||||||||||||| || |||||| |||||
Sbjct 512 TGGACCCACCACCAAGACCCGAAAACCCTAACCCGTTTTTAGTCCCACCCACTACTGTCC 571
Query 175 CCGCCGCCGCCACCGTTGCAGC--C-GTTACTGAGAATGCGGCTACTCCGTTTAGCTTAA 231
|||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 572 CCGCGGCCGCCACCGTAGCAGCAGCTGTTACTGAGAATGCGGCTACTCCGTTTAGCTTAA 631
Query 232 CAATGCCGGCGGAGAACACTTCCTCTGAGCAGCTGAAAAAGAAGAGAGGTAGGCCGAGAA 291
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 632 CAATGCCGACGGAGAACACTTCAGCTGAGCAGCTGAAAAAGAAGAGAGGTAGGCCGAGAA 691
Query 292 AGTATAATCCCGATGGGACTCTCGCCGTGACTCTATCGCCGATGCCAATCTCATCCTCGG 351
|||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||||| |
Sbjct 692 AGTATAATCCCGATGGGACTCTTGTCGTGACTTTATCGCCGATGCCAATCTCGTCCTCTG 751
Query 352 TGCCGTTGACGTCGGAGTTTCCTCCAAGGAAACGAGGAAGAGGACGTGGCAAGTCTAATC 411
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 TTCCGTTGACGTCGGAGTTTCCTCCAAGGAAACGAGGAAGAGGACGTGGCAAGTCTAATC 811
Query 412 GATGGCTCAAGAAGTCTCAAATGTTTCAATTCGATAGAAGTCCTGTTGATACCAATTTGG 471
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 812 GATGGCTCAAGAAGTCTCAAATGTTCCAATTCGATAGAAGTCCTGTTGATACCAATTTGG 871
Query 472 CAGGTGTAGGAACTGCTGATTTTGTTGGTGCCAACTTTACTCCTCATGTACTGATCGTCA 531
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 872 CAGGTGTAGGAACTGCTGATTTTGTTGGTGCCAACTTTACACCTCATGTACTGATCGTCA 931
Query 532 ACGCCGGAGAGGATGTGACGATGAAGATAATGACATTCTCTCAACAAGGATCTCGTGCTA 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 ACGCCGGAGAGGATGTGACGATGAAGATAATGACATTCTCTCAACAAGGATCTCGTGCTA 991
Query 592 TCTGCATCCTTTCAGCTAATGGTCCCATCTCCAATGTTACTCTTCGTCAATCTATGACAT 651
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 992 TCTGCATCCTTTCAGCTAATGGTCCCATCTCCAATGTTACGCTTCGTCAATCTATGACAT 1051
Query 652 CCGGCGGTACTCTAACTTATGAGGGTCGTTTTGAGATTCTCTCTTTGACTGGTTCGTTTA 711
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1052 CCGGTGGTACTCTAACTTATGAGGGTCGTTTTGAGATTCTCTCTTTGACGGGTTCGTTTA 1111
Query 712 TGCAAAATGACTCTGGGGGAACTCGAAGTAGAGCTGGTGGTATGAGTGTTTGCCTTGCAG 771
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 TGCAAAATGACTCTGGAGGAACTCGAAGTAGAGCTGGTGGTATGAGTGTTTGCCTTGCAG 1171
Query 772 GACCAGATGGTCGTGTCTTTGGTGGAGGACTCGCTGGTCTCTTTCTTGCTGCTGGTCCTG 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 GACCAGATGGTCGTGTCTTTGGTGGAGGACTCGCTGGTCTCTTTCTTGCTGCTGGTCCTG 1231
Query 832 TCCAGGTAATGGTAGGGACTTTTATAGCTGGTCAAGAGCAGTCACAGCTGGAGCTAGCAA 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 TCCAGGTAATGGTAGGGACTTTTATAGCTGGTCAAGAGCAGTCACAGCTGGAGCTAGCAA 1291
Query 892 AAGAAAGACGGCTAAGATTTGGGGCTCAACCATCTTCTATCTCCTTTAACATATCTGCAG 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1292 AAGAAAGACGGCTAAGATTTGGGGCTCAACCATCTTCTATCTCCTTTAACATATCCGCAG 1351
Query 952 AAGAACGGAAGGCGAGATTCGAGAGGCTTAACAAGTCTGTTGCTATTCCTGCACCAACTA 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1352 AAGAACGGAAGGCGAGATTCGAGAGGCTTAACAAGTCTGTTGCTATTCCTGCACCAACCA 1411
Query 1012 CTTCGTACACGCATGTAAACACAACAAATGCGGTTCACAGTTACTACACAAACTCGGTTA 1071
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1412 CTTCATACACGCATGTAAACACAACAAATGCGGTTCACAGTTACTATACAAACTCGGTTA 1471
Query 1072 ACCACGTCAAGGATCCCTTCTCGTCGTCCATCCCAGTaggaggaggagt---tggagagg 1128
|||| |||||||||||||||||||| | ||||||||||||||||||| ||||||||
Sbjct 1472 ACCATGTCAAGGATCCCTTCTCGTC-T--ATCCCAGTAGGAGGAGGAGGAGGTGGAGAGG 1528
Query 1129 taggtgaagaggaaggcgaggaagatgaagaagatgaggatgaattagaaggtgaggagg 1188
|||| ||||| | | ||| | |||||||||||| ||||||||||||||||| || |
Sbjct 1529 TAGGAGAAGA--A-G---AGG--G-TGAAGAAGATGATGATGAATTAGAAGGTGAAGACG 1579
Query 1189 aagaaTTCGGAGGCGATAGCCAATCTGACAATGAGATTCCGAGCTGATGATC--C-TACG 1245
||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||
Sbjct 1580 AAGAATTCGGAGGCGATAGCCAATCTGACAACGAGATTCCGAGCTGATGATGATCATACG 1639
Query 1246 GTTTCTTTTC 1255
||||||||||
Sbjct 1640 GTTTCTTTTC 1649
> AT5G51590.1 | Symbols: | AT hook motif DNA-binding family protein
| chr5:20956567-20959113 REVERSE LENGTH=1740
Length=1740
Score = 422 bits (228), Expect = 5e-117
Identities = 354/415 (85%), Gaps = 7/415 (2%)
Strand=Plus/Plus
Query 479 AGGAACTGCTGATTTTGTTGGTGCCAA-CTTTACTCCTCATGTACTGATC-GTCAACGCC 536
|||| ||||||| |||| || |||| ||||| |||||||| || | | || || |||
Sbjct 688 AGGACCTGCTGAAATTGTCAGT-CCAAGTTTTACACCTCATGTGCTCA-CAGTAAATGCC 745
Query 537 GGAGAGGATGTGACGATGAAGATAATGACATTCTCTCAACAAGGATCTCGTGCTATCTGC 596
|| ||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 746 GGTGAGGATGTGACAATGAAGATAATGACATTCTCTCAACAAGGCTCGCGTGCTATTTGT 805
Query 597 ATCCTTTCAGCTAATGGTCCCATCTCCAATGTTACTCTTCGTCAATCTATGACATCCGGC 656
|| |||||||| || |||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 806 ATTCTTTCAGCGAACGGTCCCATATCCAATGTTACACTTCGTCAATCTATGACATCTGGT 865
Query 657 GGTACTCTAACTTATGAGGGTCGTTTTGAGATTCTCTCTTTGACTGGTTCGTTTATGCAA 716
|||||||| ||||||||||||| |||||||||||| |||||||| ||||||||||| | |
Sbjct 866 GGTACTCTCACTTATGAGGGTCATTTTGAGATTCTTTCTTTGACGGGTTCGTTTATACCA 925
Query 717 AATGACTCTGGGGGAACTCGAAGTAGAGCTGGTGGTATGAGTGTTTGC-CTTGCAGGACC 775
| || ||| ||||| ||||| ||||||||||| |||||||| | | ||||||||||
Sbjct 926 AGCGAGAGTGGAGGAACCCGAAGCAGAGCTGGTGGGATGAGTGTCT-CTCTTGCAGGACA 984
Query 776 AGATGGTCGTGTCTTTGGTGGAGGACTCGCTGGTCTCTTTCTTGCTGCTGGTCCTGTCCA 835
||||||||||||||||||||| ||||| |||||||||||| |||| ||||||||||| ||
Sbjct 985 AGATGGTCGTGTCTTTGGTGGTGGACTTGCTGGTCTCTTTATTGCCGCTGGTCCTGTTCA 1044
Query 836 GGTAATGGTAGGGACTTTTATAGCTGGTCAAGAGCAGTCACAGCTGGAGCTAGCA 890
|||||||||||||| ||||||||| ||||| ||| | || |||| | ||| ||||
Sbjct 1045 GGTAATGGTAGGGAGTTTTATAGCGGGTCAGGAGGAATCGCAGCAGCAGC-AGCA 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61696469805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5