BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945568
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25260.1 | Symbols: | Plant invertase/pectin methylesterase... 981 0.0
> AT4G25260.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr4:12935710-12936658 REVERSE
LENGTH=949
Length=949
Score = 981 bits (531), Expect = 0.0
Identities = 605/642 (94%), Gaps = 0/642 (0%)
Strand=Plus/Plus
Query 3 CATTTGTGTTTGGAATCCAAAATGGCAAGAAGTTTCAACCTTTCTTTGATTCTCTTTGTT 62
||||||||||| |||| |||||||| |||| |||| | |||||||||||||||||||||
Sbjct 28 CATTTGTGTTTTAAATCTAAAATGGCTAGAAATTTCGAGCTTTCTTTGATTCTCTTTGTT 87
Query 63 CTGTATCTGTCCACTGCAGCAATAGCCATGGCCAGAAACCTTGAAGAGGAATCAAGTGGT 122
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 88 CTGTATCTGTCCACTGCAGCAATAGTCATGGCTAGAAACCTTGAAGAGGAATCAAGTGGT 147
Query 123 GATACGGAGTTCATTAAAGCCTCTTGTGAGACGACGTCGTACCCGGACCGATGCTTCCAG 182
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 148 GATACAGAGTTCATTAAAGCCTCTTGTGAGACGACGTCGTACCCAGACCGATGCTTCCAG 207
Query 183 TCCCTGTCTTCATATGCAAGCGAGATCAAGAAGCAGCCACGTAAGCTTGCTGAGACAGCA 242
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 208 TCTCTGTCTTCATATGCAAGCGAGATCAAGAAGCAGCCACGTAAGCTTGCTGAGACCGCG 267
Query 243 CTTGCCGTTAGCATAGCCCGAGCAAAGTCAGCCAAAACCTATGTCTCAGAGATAACTGAC 302
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 268 CTTGCCGTTAGCATAGCCCGAGCAAAGTCAGCCAAAACCTATGTATCAGAGATGACTGAT 327
Query 303 TATAAGGGAATCACAAAGAGGCAGCACGAGGCTGTAGCAGACTGTGTAGAGGAGATGGGA 362
||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 328 TATAAAGGAATCACAAAGAGGCAGCACGAGGCTGTAGCGGACTGTCTAGAGGAGATGGGA 387
Query 363 GACACTGTTGACAGGTTGAGCAACTCGCTGAAGGAACTGAAGCATCTGGAGGAAGGTGAC 422
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 388 GACACTGTTGACAGGTTGAGCAATTCGCTGAAGGAACTGAAGCATCTGGAGGAAGGTGAC 447
Query 423 AGCGGAGAAGAGTTTTGGTTCTGTCTGAGCAATGTCCGGACGTGGACAAGCGCGGCTCTG 482
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 448 AGCGGAGAAGACTTTTGGTTCTGTCTGAGCAATGTCCGGACGTGGACAAGCGCAGCACTG 507
Query 483 ACAGATGAGACCACATGTCTTGATGGGTTTGGAGGGAAAGCCATGAATGGGGAGCTGAAA 542
|||||||||||| | ||| | ||||||||||||||||| |||||| |||||||||||||
Sbjct 508 ACAGATGAGACCGCGTGTATGGATGGGTTTGGAGGGAAGGCCATGGCTGGGGAGCTGAAA 567
Query 543 AGCTTAATCAGAACACGCATTGTGAGTGTGGCGGAAGAGACGAGCAATGCCTTGGCTCTG 602
|| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 568 AGTTTAATCAGAACACACATTGTGAGTGTTGCGGAAGAGACGAGCAATGCCTTGGCTTTG 627
Query 603 ATCAATGACTTTGCTTCCAAGCATTGAAAACATATCAAAGGG 644
||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 628 ATCAATGACTTTGCTTCCAAGCATTGAAATCATTTCAAAGGG 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31346107728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5