BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945569
Length=641
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25250.1 | Symbols: | Plant invertase/pectin methylesterase... 905 0.0
> AT4G25250.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr4:12934562-12935373 FORWARD
LENGTH=812
Length=812
Score = 905 bits (490), Expect = 0.0
Identities = 586/632 (93%), Gaps = 8/632 (1%)
Strand=Plus/Plus
Query 15 AAC-AAACATGTCGCGTTTCGTGATACTCTCTCTAACTCTCATGGTTTTCATCAACTCAT 73
||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 63 AACAAAACATGTTGCGTTTCGTGGTACTCTCTCTAACTCTCATGGTTTTCATCAACTCAT 122
Query 74 CAAGCTTTCCAAATACAGTAGCCACTCCACCAGGCACGTACCAAAACCACACAACGTACG 133
||| ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 123 CAAACTTTCCAAAGACAGCAGCCACCCCACCAGGCACGTACCAAAACCACACAACGTACG 182
Query 134 TAAAAACGGCATGCAATTCAACAACATATCCTATGATGTGCTATAACTCAT-TGTCCTCT 192
|||||||||||||||| ||||||||||| |||| |||||||| |||| | |||||||
Sbjct 183 TAAAAACGGCATGCAACTCAACAACATACCCTACAATGTGCTACAACT-GTCTGTCCTCC 241
Query 193 TACTCCGCCACCATCAAGTCTGACCCAATCAAACTTTGCACAACATCACTCAACCTCAAC 252
|| ||| ||||||||||||| |||||||||||||| ||||||||||| || || ||||||
Sbjct 242 TATTCCTCCACCATCAAGTCCGACCCAATCAAACTATGCACAACATCGCTAAATCTCAAC 301
Query 253 GTCAAATCGGCTAAAAATTCCACATTAGTTGTCTCTAACCTTCTCCAAAAGGCTAAAGCC 312
|||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||||
Sbjct 302 GTCAAATCCGCTAAAAACGCCACATTAGTCGTCTCTAACCTTCTCCAAAAGGCCAAAGCC 361
Query 313 GCCAAAAGCCACGAGGTCTCGATCCTTAAAGACTGCGTGGACGAGATGAAGGACACTATC 372
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 362 GCGAAAAGCCATGAGGTCTCGATCCTTAAGGACTGCGTGGACGAGATGAAGGACACTATC 421
Query 373 GACGAGCTTAAGCAAGCGGTCGCCGAGATGAAGTATGTCAGAGGCCGAGGAAAAACTACG 432
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 422 GACGAGCTTAAGCAAGCGGTCGCCGAGATGAAGTATGTCAGAGGCGGAGGGAAAACTACG 481
Query 433 GAGGAGCATTTAAAGAACGTGATGACGTGGGTGAGCTCTGCGTTGACCTACGAGGGCACG 492
|||||||||||||||||||||| ||||||||||||||| || |||||| |||||||||||
Sbjct 482 GAGGAGCATTTAAAGAACGTGAAGACGTGGGTGAGCTCGGCTTTGACCGACGAGGGCACG 541
Query 493 TGTACGGACGGATTCGAGGAAGGGAAAGTAAATGTGGAAACAAAGAAGAAGGTGAAGAAG 552
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 542 TGTACGGACGGATTCGAGGAAGGGAGAGTAAATGTGGAAACAAAGAAGAAGGTGAAGAAG 601
Query 553 GCTGTTTCTCAGCTTTCAAAGACTACAAGCAATACTTTAGCCCTTCTTACTCATTATTTA 612
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GCTATTTCTGAGCTTTCAAAGACTACAAGCAATACTTTAGCCCTTCTTACTCATTATTTA 661
Query 613 AGTTACTGA--TGAATATCCATTATATT-CAC 641
||||| ||| | ||||||||||| ||| |||
Sbjct 662 AGTTATTGAAAT-AATATCCATTA-ATTTCAC 691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30944234552
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5