BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945574
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25210.1 | Symbols: | DNA-binding storekeeper protein-relat... 1543 0.0
AT4G00130.1 | Symbols: | DNA-binding storekeeper protein-relat... 274 1e-72
> AT4G25210.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr4:12918328-12919742 FORWARD
LENGTH=1415
Length=1415
Score = 1543 bits (835), Expect = 0.0
Identities = 1054/1157 (91%), Gaps = 25/1157 (2%)
Strand=Plus/Plus
Query 1 CTCTCTCTCTCGTAACTG--TATTCGATGGCACCGAAGAAGGCAGAGGAAGTGGTCGACA 58
|||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| |
Sbjct 93 CTCTCTCTCTCGTAACTGTTTGTTCGATGGCACCGAAGAAGGCGGAGGAAGTGGTCGA-A 151
Query 59 A-CCCTCCTACTTCCAGTGAAGAAGAGGAATCTGGCTCATCTGGAGAAGAATCTGAGTCT 117
| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 152 AGCCCTCCTGTTTCCAGTGAAGAAGAAGAATCTGGCTCATCTGGAGAAGAATCTGAATCT 211
Query 118 TCTGCTGAAGTTTCGAAGAAAGACGAGTCTTC-CAAGAAGCCTGAATCTGACTCTGAAGG 176
|||||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct 212 TCTGCTGAAGTTCCGAAGAAAGTCGAGTCTTCGCAA-AAGCCTGAATCTGACTCTGAAGG 270
Query 177 TGATTATGAATC-G-G---AG---T----CCGAATCCGATTCGGAGCCTGCTAAGACGAT 224
|| | |||||| | | || | |||| |||| || |||||||||||||||||
Sbjct 271 CGAATCTGAATCGGAGTCCAGTTCTGGGCCCGAGCCCGAGTCCGAGCCTGCTAAGACGAT 330
Query 225 GGAGCTGATGCCTCTTGTGACCAAACCAATTCCAGCCAAGTCTGGATCTGCCGCGACTGT 284
|||||| |||| ||| ||| ||||||||||||| | |||||||||||||||||||||
Sbjct 331 CAAGCTGAAGCCTGTTGGGACTAAACCAATTCCAGAGACGTCTGGATCTGCCGCGACTGT 390
Query 285 ACCTGAGAGTTCAACGGCTAAGCGTCCTTTGAAGGAACCTGCTTCTGAAGCTATTAAGAA 344
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 391 ACCTGAGAGTTCAACGGCTAAGCGTCCTTTGAAGGAAGCTGCTCCTGAAGCTATTAAGAA 450
Query 345 GCTCAAGACATCGGAGACTGACCATGCGAAGAAGCCGATAACAAATGATGAGGTTAAGAA 404
|| ||||||||||| ||||| |||| ||||||||||||||| |||||||||||||||||
Sbjct 451 GCAGAAGACATCGGACACTGAGCATGTGAAGAAGCCGATAACTAATGATGAGGTTAAGAA 510
Query 405 GATTTCTGGAGATGATGCTAAGAAGATGTTTCAGAGATTGTTCAGCGAGGCTGATGAAAT 464
||||||| ||| |||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 511 GATTTCTTCAGAGGATGCTAAGAAGATGTTTCAGAGATTGTTCAGTGAGACGGATGAAAT 570
Query 465 CGCTTTGCTTCAAGGTATTATTGATTTCACATCTACCAAAGGAGATCCTTATGAGGATAT 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 CGCTTTGCTTCAAGGTATTATTGATTTCACATCTACCAAAGGAGATCCTTATGAGGATAT 630
Query 525 TGATGCTTTTTGCATTTATGTTAAGAAGTTGATCGATTTCAATGCTACCAAAAACCAAAT 584
||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 631 TGATGCTTTTTGCATTTATGTGAAGAAACTGATCGATTTCGATGCTACCAAAAACCAAAT 690
Query 585 CGTGACCAAACTTCAGAGGTTGAAGAAGAAGTTTAATAACACTGTGAAGAAGTCGCTTAA 644
|| || |||||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct 691 TGTTACTAAACTTCAGAGGTTGAAGAAGAAGTTTAATAATGCTGTGAAGAATTCTCTTAA 750
Query 645 GAAGGGAAAGACTGAAGATGAGATTGAATTTGCTAAAGATATTGAGCAGAAAGGCTTTGA 704
||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| |||||
Sbjct 751 GAAGGGAAAGACTGAAGATGATATTGAGTTTGCTAAAGATCTTGAGCAAAAAGGTTTTGA 810
Query 705 CTTGTCCAGAAAGATTTGGGGAAACAATGGTGTTTTGGCTT-CT---AAATCATCAAGAA 760
|||||||||||||||||||||| |||||||||||||| || || ||||||||||| |
Sbjct 811 ATTGTCCAGAAAGATTTGGGGAAGCAATGGTGTTTTGG-TTACTGGTAAATCATCAAGGA 869
Query 761 AGAAAGTTGGAGGAACCCCTGCCCCGAAAGAGATGAAGTTAGTAGCTCACTCTTCTCCCA 820
|||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 870 AGAAAGTTGGAGGAACACCTGCACCGAAAGAGATGAAGTTAGTAGCTCACTCTACTCCCA 929
Query 821 AGAAACAACAAGAAGAAGCCAAGAAACCGGAAAAAACAGAGACAAAGGTTGTGAACACAA 880
||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||
Sbjct 930 AGAAACAACAAGAAGAAGCGAAGAAACCGGAAAGAACAGAGGCAAAGGTTGTGAACACAG 989
Query 881 GTCTCTCTATTGGTAGAGAGATAGCGTCGTTCTTCAATGCAGAGAATGCGAGCTCTTGTG 940
||||||| ||||||| |||||| || |||||| |||||||||| |||| ||| |||||||
Sbjct 990 GTCTCTCCATTGGTAAAGAGATTGCATCGTTCCTCAATGCAGATAATGGGAGTTCTTGTG 1049
Query 941 GTTTGGATGAATCCACAATAACTGCGGTTTGGGCAAAGGTTGCGGATGGAGCAGAGAAGA 1000
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1050 GTTTGGATGAATCCACATTAACTGCGGTTTGGGCAAAGGTTGCGGATGGAGCTGAGAAGA 1109
Query 1001 GAGAAGTGGAGG-GAAAATGGAAGAAGCTCAAGGCTAAGGAGTTTGAGCTATGTTTGCAG 1059
|||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1110 GAGAAGTGGAGGAGAAA-TGGAAGAAGCTTAAGGCTAAGCAGTTTGAGCTATGTTTGCAG 1168
Query 1060 AGGTCTGGACTCGTGAACGAAACTGCAAAGATGATATTCAAAGCCTATGAATCCTGAGCG 1119
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1169 AGGTCTGGACTCGTGAATGAAACTGCAAAGATGATATTCAAAGCCTATGAATCTTGAGCG 1228
Query 1120 GTTTGTCTTTTTACTTT 1136
|||||||||||||||||
Sbjct 1229 GTTTGTCTTTTTACTTT 1245
> AT4G00130.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr4:48266-49068 FORWARD LENGTH=733
Length=733
Score = 274 bits (148), Expect = 1e-72
Identities = 219/251 (87%), Gaps = 14/251 (6%)
Strand=Plus/Plus
Query 232 ATGCCTCTTGTGACCAAACCAATTCCAGCCAAGTCTGGATCTGCCGCGACTGTACCTGAG 291
|||||| | ||||||||||||||||||| || | | | |||||| ||||||||||
Sbjct 1 ATGCCTGTCGTGACCAAACCAATTCCAG---AGAC--G---T-CCGCGAATGTACCTGAG 51
Query 292 AGTTCAACGGCTAAGCGTCCTTTGAAGGAACCTGCTTCTGAAGCTATTAAGAAGCTCAAG 351
| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 52 ACTTCAACGGCTAAGCGTCCTTTGAAGGAAGCTGCTCCTGAAGCTATTAAGAAGCAGAAG 111
Query 352 ACATCGGAGACT-GACCATGCGAAGAAGCCGATAACAAATGATGAGGTTAAGAAGATTTC 410
|||||||| | | || |||| ||||||||||| ||| ||||||||||||||||||||| |
Sbjct 112 ACATCGGA-AGTTGAGCATGTGAAGAAGCCGACAACTAATGATGAGGTTAAGAAGATTGC 170
Query 411 TGGAGATGATGCTAAGAAGATGTT-T--CAGAGATTGTTCAGCGAGGCTGATGAAATCGC 467
|||||| ||||||||||||||||| | |||||||||||||| |||||||| ||||||||
Sbjct 171 TGGAGAGGATGCTAAGAAGATGTTGTTTCAGAGATTGTTCAGTGAGGCTGACGAAATCGC 230
Query 468 TTTGCTTCAAG 478
|||||||||||
Sbjct 231 TTTGCTTCAAG 241
Score = 215 bits (116), Expect = 8e-55
Identities = 193/229 (84%), Gaps = 9/229 (4%)
Strand=Plus/Plus
Query 547 AAGAAGTTGATCGATTTCAATGCTACCAAAAACCAAATCGTGACCAAACTTCAGAGGTTG 606
||||| ||||||| ||| ||||||||||||||||||| || || |||||||||||||||
Sbjct 239 AAGAAACTGATCGAGTTCGATGCTACCAAAAACCAAATTGTTACTAAACTTCAGAGGTTG 298
Query 607 AAGAAGAAGTTTAATAACACTGTGAAGAA-GTCGCTTAAGAAGGGAAAGACTGAAGATGA 665
|||||||||||||||||| |||||||||| | ||| ||||||||| |||| ||||||||
Sbjct 299 AAGAAGAAGTTTAATAACGCTGTGAAGAATG-CGCGTAAGAAGGGTCAGACAGAAGATGA 357
Query 666 GATTGAATTTGCTAAAGATATTGAGCAGAAAGGCTTTGACTTGTCCAGAAAGATTTGGGG 725
| | || | ||||||||| | |||| | ||| | ||||||||||||| || |||||||||
Sbjct 358 GGTCGAGTATGCTAAAGAGAGTGAGAAAAAACGTTTTGACTTGTCCATAATGATTTGGGG 417
Query 726 AAACAATGGTGTTTTGGCTT-CT---AAATCATCAA-GAAAGAAAGTTG 769
| ||| |||||||||| || || |||||||||| ||| ||||||||
Sbjct 418 GAGCAACGGTGTTTTGG-TTGCTGGTAAATCATCAAAGAA-GAAAGTTG 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55722604950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5