BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945589

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G25050.2 | Symbols: ACP4 | acyl carrier protein 4 | chr4:128...   442    1e-123


> AT4G25050.2 | Symbols: ACP4 | acyl carrier protein 4 | chr4:12870006-12871316 
FORWARD LENGTH=914
Length=914

 Score =  442 bits (239),  Expect = 1e-123
 Identities = 284/305 (93%), Gaps = 5/305 (2%)
 Strand=Plus/Plus

Query  1    CTGAGTTGTGTATTGAGCTTCATCTCCTTCAAATGGCTTCCTTATCAACCACTTCTCTAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  141  CTGAGTTGTGTATTGAGCTTCATCTCCTTCAAATGGCTTCCTTATCAACCACTTCCCTAA  200

Query  61   GCTTCAAAGCTCCGTCCACAAGAATTTCTCAGGTGTTAAGGAAAGCCTCAAGTTTTCAGT  120
            ||||||||||||||||||| | |||||| ||||| ||||||||||||||||||| |||||
Sbjct  201  GCTTCAAAGCTCCGTCCACCACAATTTCACAGGTTTTAAGGAAAGCCTCAAGTTCTCAGT  260

Query  121  CTGTGACCTTTGGTCGTGTCACGTCTTCAA-A--GAGCCTACGTCTTCAAATCAGTTGTG  177
            ||||||||||||||||| |||||||||||| |  |||||| |||||||||||||||||||
Sbjct  261  CTGTGACCTTTGGTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTG  320

Query  178  CAGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAACAACAATTGGCTTT-G  236
            | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct  321  CCGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTGGCTTTAG  380

Query  237  TCCGCTGACACTCCGATCACTGCCGAATCCAAGTTCTCTGCTCTTGGTGCCGATTCTCTC  296
             | |||||   |||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  381  -CTGCTGATGTTCCGCTCACTGCTGAATCCAAGTTCTCTGCTCTTGGTGCCGATTCTCTC  439

Query  297  GACAC  301
            |||||
Sbjct  440  GACAC  444


 Score =  241 bits (130),  Expect = 6e-63
 Identities = 150/160 (94%), Gaps = 0/160 (0%)
 Strand=Plus/Plus

Query  302  TGTGGAGATAGTGATGGAGTTGGAGGAAAAGTTTAACATTAGTGTGGAGGAATCTGATGC  361
            ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct  481  TGTGGAGATAGTGATGGCGTTGGAGGAAAAGTTTAACATAAGTGTGGAGGAATCTGATGC  540

Query  362  TCAAAACATTACAACGATCCAAGAGGCTGCTGATTTGATAGAGGAACTTGTTCAGAAGAA  421
            |||||||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct  541  TCAAAACATTACGACCATCCAAGAGGCGGCTGATTTGATAGAGGACCTTGTTCAAAAGAA  600

Query  422  ACCCGCTGCGGAAACTTCCTGAACCGGCTATCtttttttt  461
            |||||| |||||||||||||||||||||| |||||| |||
Sbjct  601  ACCCGCGGCGGAAACTTCCTGAACCGGCTGTCTTTTCTTT  640



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5