BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945598
Length=450
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24975.1 | Symbols: | Plant self-incompatibility protein S1... 425 1e-118
AT4G24974.1 | Symbols: | Plant self-incompatibility protein S1... 387 6e-107
AT4G24973.1 | Symbols: | Plant self-incompatibility protein S1... 276 1e-73
> AT4G24975.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr4:12843802-12844209 FORWARD LENGTH=408
Length=408
Score = 425 bits (230), Expect = 1e-118
Identities = 348/406 (86%), Gaps = 4/406 (1%)
Strand=Plus/Plus
Query 23 ATGAGTGGCTCTTCGGTATTTCACATAATTTTGAATGTCACATTCATGGTTTTTCTCTTT 82
|||| ||||||||| | ||||||||||| |||| ||| |||||||||||||||||||||
Sbjct 1 ATGAATGGCTCTTCAGCGTTTCACATAATATTGAGTGTTACATTCATGGTTTTTCTCTTT 60
Query 83 GGTGGTCTCTGTGAGGCTCTTCCTGTGCTAAAGGCGGACATCATTAATGATATTGGTCCA 142
||||||||||| |||||| | |||| |||| | ||| ||||| |||||||||||||||
Sbjct 61 GGTGGTCTCTGCGAGGCTGGTGTTGTGGTAAACGTGGATATCATCAATGATATTGGTCCA 120
Query 143 AATGTTCAATTGGGATTACACTGCAAATCGAAACACGAAGATCTCGGAGCACAATCTTTA 202
||||||||| ||||| |||||||||||||||| || ||||||||||| |||||||||||
Sbjct 121 AATGTTCAACTGGGACTACACTGCAAATCGAAGGACAAAGATCTCGGACCACAATCTTTA 180
Query 203 GCCCCTCATCAACACTGGGGGTTTGGAAAATCTCTTGAATTTTGGGGAACGACTCttttt 262
|||||||| ||||||||||||||| ||||| | ||||| |||||||| |||||| |||
Sbjct 181 GCCCCTCAACAACACTGGGGGTTTAGAAAAACACTTGATTTTTGGGGCGTGACTCTGTTT 240
Query 263 ttttGTCATTTTCAATGGGGCAACCAATCTAAATGGTTCAATATTCTTGATGGTAACAGA 322
|||||||||||| |||||| |||||||| |||||||| ||||||||| || | |||
Sbjct 241 TTTTGTCATTTTGAATGGGAAAACCAATCCAAATGGTTTGATATTCTTGTTGCTGGGAGA 300
Query 323 GATAAAAAAGA-ATGTGATGTCCATCCGTGTGTTTGGAGTATAAGACCTAGTGGTCCATG 381
||| | ||| | ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAT-AGAAATACATGTGCTGAACATCCGTGTGTTTGGAGTATAAGACCTAGTGGTCCATG 359
Query 382 TAAATTAACAGGTCATACACAA-TGTTTCCCATGGAATGATCAGTA 426
|| | |||| ||| | | | || |||||||||||||||||||||||
Sbjct 360 TAGACTAACGGGTAA-AGAAAAATGTTTCCCATGGAATGATCAGTA 404
> AT4G24974.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr4:12842850-12843363 FORWARD LENGTH=514
Length=514
Score = 387 bits (209), Expect = 6e-107
Identities = 373/449 (83%), Gaps = 24/449 (5%)
Strand=Plus/Plus
Query 1 TTATTAT--aaaaa-aaTATTCAAAATGAGTGGCTCTTCGGTATTTCACATAATTTTGAA 57
||||||| ||||| ||||||||||||||||||||||| || ||||||||| || |||
Sbjct 15 TTATTATCAAAAAATAATATTCAAAATGAGTGGCTCTTTGGCATTTCACATCATAATGAG 74
Query 58 TGTCACATTCATGGTTTTTCTCTTTGGTGGTCTCTGTGAGGCTCTTCCTGTGCTAAAGGC 117
||||||||||||||||||| ||||||||||||| || |||| | || || | |||| |
Sbjct 75 TGTCACATTCATGGTTTTTTTCTTTGGTGGTCTATGCGAGG--C-TCGTGGGGTAAACGT 131
Query 118 GGA-CATCATTAATGATATTGGTCCAAATGTTCAATTGGGATTACACTGCAAATCGAA-A 175
||| | |||| |||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 132 GGATC-TCATCAATGATATTGGTCCAAATGTTCAATTAGGACTACACTGCAAATCGAAGA 190
Query 176 CACGAAGATCTCGGAGCACAATCTTTAGCCCCTCATCAACACTGGGGGTTTGGAAAATCT 235
|| ||||||||||| |||||||||||| | || ||||||||||||||||| || ||||
Sbjct 191 -ACAAAGATCTCGGATCACAATCTTTAGTCTCTGATCAACACTGGGGGTTTAGAGCATCT 249
Query 236 CTTGAATTTTGGGGAAC--GACTCtttttttttGTCATTTTCAATGGGGCAACCAATCTA 293
|||| |||| ||| | |||||||||||||||||||||| |||||| |||||||| |
Sbjct 250 CTTG-GTTTT-TGGACCGTGACTCTTTTTTTTTGTCATTTTGAATGGGAAAACCAATCCA 307
Query 294 AATGGTTCAATATTCTTGATGGTA-ACAGAGATAAAAAAGAATGTGATGTCCATCCGTGT 352
||||||| ||||| ||| | | | |||||||| || ||||| || ||| |||
Sbjct 308 AATGGTTTGATATTTTTG-TTGAAGACAGAGAT--TTAA-CATGTG--GT-GATCATTGT 360
Query 353 GTTTGGAGTATAAGACCTAGTGGTCCATGTAAATTAACAGGTC-ATACACAATGTTTCCC 411
||||||||||||||||||||||||||||||| | |||| |||| | | | ||||||||||
Sbjct 361 GTTTGGAGTATAAGACCTAGTGGTCCATGTAGACTAACGGGTCGAGAAA-AATGTTTCCC 419
Query 412 ATGGAATGATCAGTACTAAAACGTTGTAT 440
||||||| || |||| | |||||||||||
Sbjct 420 ATGGAATAATAAGTATTGAAACGTTGTAT 448
> AT4G24973.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr4:12840970-12841374 FORWARD LENGTH=405
Length=405
Score = 276 bits (149), Expect = 1e-73
Identities = 313/390 (80%), Gaps = 20/390 (5%)
Strand=Plus/Plus
Query 40 ATTTCACATAATTTTGAA-TGTCACATTCATGGTTTTTCTCTTTGGTGGTCTCTGTGAGG 98
||||| | | ||||| || ||| | ||| || | ||||||||||| |||||| || ||||
Sbjct 15 ATTTCGCTTGATTTT-AAGTGTTATATTAATCGCTTTTCTCTTTGTTGGTCTTTGCGAGG 73
Query 99 CTCTTCCTGTGC---TAAAGGCGGACATCATTAATGATATTGGTCCAAATGTTCAATTGG 155
||| | | | || |||| | ||| ||||| ||||||||||||||||||||||||||||
Sbjct 74 CTCAT-C-G-GCATATAAATGTGGATATCATCAATGATATTGGTCCAAATGTTCAATTGG 130
Query 156 GATTACACTGCAAATCGAAACACGAAGATCTCGGAGCACAATCTTTAGCCCCTCATCAAC 215
|| |||||||||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 131 GACTACACTGCAAATCGAAGGGTAAAGATCTCGGACCTCAATCTTTAGCCCCTCATCAAC 190
Query 216 ACTGGGGGTTTGGAAAATCTCTTGAAT-TTTGGG-GAACGACTCtttttttttGTCATTT 273
||||||| ||| ||||||| ||| |||||| || ||||||| ||||||||||| ||
Sbjct 191 ACTGGGGATTTACTGCATCTCTT-AATGTTTGGGAGA-CGACTCTGTTTTTTTGTCACTT 248
Query 274 TCAATGGGGCAACCAATCTAAATGGTTCAATATTCTTGATGGTAAC-AGAGATAAAAAAG 332
| |||| || || |||| ||||||| |||||||| | || || ||||||| || |
Sbjct 249 TGTTTGGGAAAATCAGTCTAGATGGTTCGATATTCTTAA-GGAAAAGAGAGATACAATTG 307
Query 333 AATGTGA-TGTCCATCCGTGTGTTTGGAGTATAAGACCTAGTGGTCCATGTAAATTAACA 391
|||| | | || |||| |||||||||||||| ||||||||||||||||||| |||||
Sbjct 308 TATGTAAATATC-ATCCCTGTGTTTGGAGTATTAGACCTAGTGGTCCATGTAGGTTAAC- 365
Query 392 GG-TCAT-ACACAATGTTTCCCATGGAATG 419
|| |||| | | |||||| |||||| ||||
Sbjct 366 GGATCATGAAA-AATGTTACCCATGTAATG 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21414061074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5