BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945599

Length=1030
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24980.1 | Symbols:  | nodulin MtN21 /EamA-like transporter ...   424    1e-117
  AT4G24972.1 | Symbols: TPD1 | tapetum determinant 1 | chr4:1283...   178    1e-43 


> AT4G24980.1 | Symbols:  | nodulin MtN21 /EamA-like transporter 
family protein | chr4:12846797-12848376 REVERSE LENGTH=813
Length=813

 Score =  424 bits (229),  Expect = 1e-117
 Identities = 312/352 (89%), Gaps = 6/352 (2%)
 Strand=Plus/Plus

Query  260  GCCATTGTTGGAGCAAAACTTGTACTACACAGGCATGCAGCTCACAACGGCGACTTTCAC  319
            |||| | |||||||||||||||||||| ||||||||||||||||||||| | ||||||||
Sbjct  117  GCCACTATTGGAGCAAAACTTGTACTATACAGGCATGCAGCTCACAACGCCCACTTTCAC  176

Query  320  TGCCGCTATGTTCAACCTAATCCCGGCCATTACATTTGTAATGGCCTGTGTATTCAGGTT  379
            | |||  |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||
Sbjct  177  TTCCGGAATGTTCAACCTACTCCCGGCCATTACATTTGTGATGGCCTGTATATTCAGGTT  236

Query  380  GGAGAAAGTGTCTATTCACACTCATCGAGGAAAAGCAAAAGTGGTTGGGACGTGTGTGGC  439
            |||||||||| ||||||||| |||||||||||||||||||||  |||| |||||||||||
Sbjct  237  GGAGAAAGTGGCTATTCACAGTCATCGAGGAAAAGCAAAAGTTCTTGGAACGTGTGTGGC  296

Query  440  GGTTGCGGGAGCGATGATGATGACATTTTGGAGCGGCCAGGTGATTCCGTTGCCATGGAC  499
            |||||| ||||| ||| |||||||||||||||| |||||||||||||| |||||||||| 
Sbjct  297  GGTTGCTGGAGCAATGCTGATGACATTTTGGAGAGGCCAGGTGATTCCATTGCCATGGAA  356

Query  500  CAGGTCGCTGCATGCCAAGAAGATTCACATG-CATGCTGATGG-CAT-CTTAGAAGGAGG  556
            ||| | |||||| || |||||||| |||| | |||| ||| || ||| || || ||||||
Sbjct  357  CAGCTTGCTGCACGCAAAGAAGATCCACA-GACATGATGA-GGACATCCTAAG-AGGAGG  413

Query  557  GCTAATGATTGTGTCCAGCTGCCTGAGTTGGAGCTTCTATGTTATTCTTCAG  608
            ||| ||| | |||| ||||||| |||||||||||||||||||||||||||||
Sbjct  414  GCTTATGCTAGTGTGCAGCTGCTTGAGTTGGAGCTTCTATGTTATTCTTCAG  465


 Score =  176 bits (95),  Expect = 4e-43
 Identities = 133/149 (89%), Gaps = 11/149 (7%)
 Strand=Plus/Plus

Query  771  GGATGTTTCTCAGCAATAACGGTTTACGTTGTTGGGTGGATGGCACAGAAGAAGGGTCCA  830
            |||||||||||||||| |||||||||||||||||||||||||||||||||| |      |
Sbjct  513  GGATGTTTCTCAGCAACAACGGTTTACGTTGTTGGGTGGATGGCACAGAAG-A------A  565

Query  831  GTGTTCGTGAGCATCTTCAATCCAATCAATTTGATTGTCACGGCGGTCATTAGCTCGGTC  890
            | |   ||||| |||||||||||||||||| |||||| ||||||||||||||||||||| 
Sbjct  566  G-G---GTGAGTATCTTCAATCCAATCAATCTGATTGCCACGGCGGTCATTAGCTCGGTT  621

Query  891  GTACTCTCTGAGCAGATGTTTGTCGGGAG  919
            |||||||||||||||||||||||||||||
Sbjct  622  GTACTCTCTGAGCAGATGTTTGTCGGGAG  650


> AT4G24972.1 | Symbols: TPD1 | tapetum determinant 1 | chr4:12837353-12839823 
FORWARD LENGTH=935
Length=935

 Score =  178 bits (96),  Expect = 1e-43
 Identities = 110/116 (95%), Gaps = 3/116 (3%)
 Strand=Plus/Minus

Query  918   AGAGAGGGAAAAAAGAGTTT-G--ATATATTCATTTATCTATCACTGTTTCACATCCCAA  974
             |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||
Sbjct  935   AGAGAGGGAAAAAAGAGTTTGGATATATATTCATTTATCTATCACTGTTTCACATCCCAA  876

Query  975   GAGAACCAAAAAACAAAAGTGGATGTTATCGTATGAATATGACTAATCTCATATTT  1030
             ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||
Sbjct  875   GAGAACCAAAAAACAAAAGTGGATGGTATGGTATGAATACGACTAATCTCATATTT  820



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 50485317735


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5