BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945599 Length=1030 Score E Sequences producing significant alignments: (Bits) Value AT4G24980.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 424 1e-117 AT4G24972.1 | Symbols: TPD1 | tapetum determinant 1 | chr4:1283... 178 1e-43 > AT4G24980.1 | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr4:12846797-12848376 REVERSE LENGTH=813 Length=813 Score = 424 bits (229), Expect = 1e-117 Identities = 312/352 (89%), Gaps = 6/352 (2%) Strand=Plus/Plus Query 260 GCCATTGTTGGAGCAAAACTTGTACTACACAGGCATGCAGCTCACAACGGCGACTTTCAC 319 |||| | |||||||||||||||||||| ||||||||||||||||||||| | |||||||| Sbjct 117 GCCACTATTGGAGCAAAACTTGTACTATACAGGCATGCAGCTCACAACGCCCACTTTCAC 176 Query 320 TGCCGCTATGTTCAACCTAATCCCGGCCATTACATTTGTAATGGCCTGTGTATTCAGGTT 379 | ||| |||||||||||| ||||||||||||||||||| ||||||||| |||||||||| Sbjct 177 TTCCGGAATGTTCAACCTACTCCCGGCCATTACATTTGTGATGGCCTGTATATTCAGGTT 236 Query 380 GGAGAAAGTGTCTATTCACACTCATCGAGGAAAAGCAAAAGTGGTTGGGACGTGTGTGGC 439 |||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||| Sbjct 237 GGAGAAAGTGGCTATTCACAGTCATCGAGGAAAAGCAAAAGTTCTTGGAACGTGTGTGGC 296 Query 440 GGTTGCGGGAGCGATGATGATGACATTTTGGAGCGGCCAGGTGATTCCGTTGCCATGGAC 499 |||||| ||||| ||| |||||||||||||||| |||||||||||||| |||||||||| Sbjct 297 GGTTGCTGGAGCAATGCTGATGACATTTTGGAGAGGCCAGGTGATTCCATTGCCATGGAA 356 Query 500 CAGGTCGCTGCATGCCAAGAAGATTCACATG-CATGCTGATGG-CAT-CTTAGAAGGAGG 556 ||| | |||||| || |||||||| |||| | |||| ||| || ||| || || |||||| Sbjct 357 CAGCTTGCTGCACGCAAAGAAGATCCACA-GACATGATGA-GGACATCCTAAG-AGGAGG 413 Query 557 GCTAATGATTGTGTCCAGCTGCCTGAGTTGGAGCTTCTATGTTATTCTTCAG 608 ||| ||| | |||| ||||||| ||||||||||||||||||||||||||||| Sbjct 414 GCTTATGCTAGTGTGCAGCTGCTTGAGTTGGAGCTTCTATGTTATTCTTCAG 465 Score = 176 bits (95), Expect = 4e-43 Identities = 133/149 (89%), Gaps = 11/149 (7%) Strand=Plus/Plus Query 771 GGATGTTTCTCAGCAATAACGGTTTACGTTGTTGGGTGGATGGCACAGAAGAAGGGTCCA 830 |||||||||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 513 GGATGTTTCTCAGCAACAACGGTTTACGTTGTTGGGTGGATGGCACAGAAG-A------A 565 Query 831 GTGTTCGTGAGCATCTTCAATCCAATCAATTTGATTGTCACGGCGGTCATTAGCTCGGTC 890 | | ||||| |||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 566 G-G---GTGAGTATCTTCAATCCAATCAATCTGATTGCCACGGCGGTCATTAGCTCGGTT 621 Query 891 GTACTCTCTGAGCAGATGTTTGTCGGGAG 919 ||||||||||||||||||||||||||||| Sbjct 622 GTACTCTCTGAGCAGATGTTTGTCGGGAG 650 > AT4G24972.1 | Symbols: TPD1 | tapetum determinant 1 | chr4:12837353-12839823 FORWARD LENGTH=935 Length=935 Score = 178 bits (96), Expect = 1e-43 Identities = 110/116 (95%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 918 AGAGAGGGAAAAAAGAGTTT-G--ATATATTCATTTATCTATCACTGTTTCACATCCCAA 974 |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 935 AGAGAGGGAAAAAAGAGTTTGGATATATATTCATTTATCTATCACTGTTTCACATCCCAA 876 Query 975 GAGAACCAAAAAACAAAAGTGGATGTTATCGTATGAATATGACTAATCTCATATTT 1030 ||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| Sbjct 875 GAGAACCAAAAAACAAAAGTGGATGGTATGGTATGAATACGACTAATCTCATATTT 820 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50485317735 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5