BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945600 Length=592 Score E Sequences producing significant alignments: (Bits) Value AT4G24972.1 | Symbols: TPD1 | tapetum determinant 1 | chr4:1283... 809 0.0 AT4G24977.1 | Symbols: | Pseudogene of AT4G24972; TPD1 (TAPETU... 405 2e-112 > AT4G24972.1 | Symbols: TPD1 | tapetum determinant 1 | chr4:12837353-12839823 FORWARD LENGTH=935 Length=935 Score = 809 bits (438), Expect = 0.0 Identities = 542/588 (92%), Gaps = 24/588 (4%) Strand=Plus/Plus Query 7 CGACGTCTAGGCACATGAACCGACGGCGACTTTTGGTATCGGCGACACTGGTCTCGTACT 66 ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 187 CGACGTCTACGCACATGAACCGACGGCGACTTTTGGTATCGGCGACACTGCTCTCGTATT 246 Query 67 TGCTCTACGGCATGGCTTTCGTCTCCGTTGAAGCCTCCGGTGGTACTAAAATCAAACGTG 126 ||||||||||||||||| ||||||||||||||||||||||| | ||| Sbjct 247 TGCTCTACGGCATGGCTCTCGTCTCCGTTGAAGCCTCCGGT-G--------------GTG 291 Query 127 AAAAGCTTAGAGATTATCTGGATTTGACTAAAACGACGACGTTGTCACCGAGC-TCATCA 185 |||||||||||||| ||||||||||||||||||||||||||| |||||||||| | |||| Sbjct 292 AAAAGCTTAGAGATAATCTGGATTTGACTAAAACGACGACGTCGTCACCGAGCAT-ATCA 350 Query 186 CATCGGAAAATGCTTCTTCTCTCTCCTGGTCCTGAAAAAGGAAAAGCAGAAAGCAGGGCA 245 |||||||||||||| ||||||||||||||| || |||||| ||||||| || | | Sbjct 351 CATCGGAAAATGCTGCTTCTCTCTCCTGGTACT------GGAAAAACAGAAAGGAGTGTA 404 Query 246 GAGCCGGAGAGAATCGGAGATAAGTGCAAGAGTACGGACATAGTGGTGAACCAAGCAGTA 305 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 405 GAGCCGGAGAGAATTGGAGAAAAGTGCAAGAGTACGGACATAGTGGTGAACCAAGCAGTA 464 Query 306 ACGGAACCAATGCCTAACGGAATACCAGGTTACATGGTAGAGATAACGAACCAGTGTATG 365 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 465 ACGGAACCAATGCCTAACGGAATACCAGGCTACATGGTAGAGATAACGAACCAGTGTATG 524 Query 366 TCTGGATGCATAATTTCGAGGATCCACATCAACTGCGGGTGGTTCAGCTCGGCTAAGTGG 425 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | Sbjct 525 TCTGGATGCATAATTTCGAGGATCCACATCAACTGCGGTTGGTTCAGCTCAGCTAAGTTG 584 Query 426 ATAAACCCAAGAGTCTTCAAGCGTATTCACTACGACGACTGTCTCGTCAACAACGGCAAG 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 585 ATAAACCCAAGAGTCTTCAAGCGTATTCACTACGACGACTGTCTCGTCAACAACGGCAAG 644 Query 486 CCTTTACCTTTTGGCTCCACTCTCTCTTTTCACTACGCCAACACTTTCCCTTACCATCTC 545 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 CCTTTGCCTTTTGGCTCCACTCTCTCTTTTCACTACGCCAACACTTTCCCTTACCATCTC 704 Query 546 TCTGTCGCCTTCGTGACCTGTTCTTAGGTGGTGGCTTTT-CTTTTAGT 592 ||||||||||||||||| ||| ||||||| ||||||||| |||||||| Sbjct 705 TCTGTCGCCTTCGTGACATGTGCTTAGGTCGTGGCTTTTTCTTTTAGT 752 > AT4G24977.1 | Symbols: | Pseudogene of AT4G24972; TPD1 (TAPETUM DETERMINANT 1) | chr4:12845676-12846015 FORWARD LENGTH=340 Length=340 Score = 405 bits (219), Expect = 2e-112 Identities = 317/359 (88%), Gaps = 27/359 (8%) Strand=Plus/Plus Query 222 AAAGGAAAAGCAGAAAGCAGGGCAGAGCCGGAGAGAATCGGAGATAAGTGCAAGAGTACG 281 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 AAAGGAAAAGCAGAAAGCAGGGCAGAGCCGGAAAGAATCGGAGATAAGTGCAAGAGTACG 60 Query 282 GACATAGTGGTGAACCAAGCAGTAACGGA-ACCAATGCCTAACGGAATACCAGGTTACAT 340 ||||||||||||||||||||||| || || |||||||||||| ||||||||| |||| || Sbjct 61 GACATAGTGGTGAACCAAGCAGTGAC-GATACCAATGCCTAATGGAATACCATGTTATAT 119 Query 341 GGTAGAGATAACGAACCAGTGTATGTCTGGATGCATAATTTCGAGGATCCACATCAACTG 400 | | | | |||||||||||||||||||||||||||| || |||||||| Sbjct 120 --T---G-T--------A--GTATGTCTGGATGCATAATTTCGAGGATACATATCAACTG 163 Query 401 CGGGTGGTTCAGCTCGGCTAAGTGGATAAACCCAAGAGTCTTCAAGCGTATTCACTACGA 460 ||| ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||| Sbjct 164 CGGTTGGTTCAGCTCGGCTAAGTGGATAAACCCAAGACTCTTCAAACGTATTTACTACGA 223 Query 461 CGACTGTCTCGTCAACAACGGCAAGCC----TTTACCTTTTGGCTCCACTCTCTCTTTTC 516 |||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| Sbjct 224 AGACTGTCTCGTCAACAACAGCAAGCCTAAATTTGCCTTTTGGCTCCACTCTCTCTTTTC 283 Query 517 ACTAC-GCCAACACTTTCCCTTACCA-TCTCTCTGTCG-CCTTCGTGACCTGTTCTTAG 572 ||||| || ||||||||||||||||| ||| |||| || |||||||||||||||||||| Sbjct 284 ACTACCGC-AACACTTTCCCTTACCAATCTATCTG-CGGCCTTCGTGACCTGTTCTTAG 340 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28482761349 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5