BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945606
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24930.1 | Symbols: | thylakoid lumenal 17.9 kDa protein, c... 1066 0.0
> AT4G24930.1 | Symbols: | thylakoid lumenal 17.9 kDa protein,
chloroplast | chr4:12821223-12823742 REVERSE LENGTH=1092
Length=1092
Score = 1066 bits (577), Expect = 0.0
Identities = 661/702 (94%), Gaps = 4/702 (1%)
Strand=Plus/Plus
Query 1 GTAACCCATAAACTAGAAACATGAGTTTGGTCGGCAGTTTACAACTCATCCTCCCGCCAC 60
|||| |||||||||| ||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 123 GTAA-CCATAAACTACAAACATGAGTTTGGTCGCCAGTTTGCAACTCATCCTCCCGCCAC 181
Query 61 GGCCGAGAAGCACCAAGTTCTTGTGCTCAATGAAAAGCCCAACACAAGGACAAGAAGACc 120
||||||||||||||||||| ||||||||| || ||||||||| ||||| ||||| | | |
Sbjct 182 GGCCGAGAAGCACCAAGTTGTTGTGCTCATTGCAAAGCCCAAAACAAGAACAAG-A-A-C 238
Query 121 tctcttcttcttctccttcaatctctctcttgccaaaactaatctcgtttgctcttgctc 180
|||||||| |||||||| |||||||||| || |||||||||||||| ||||||||||||
Sbjct 239 TCTCTTCTACTTCTCCTCCAATCTCTCTTTTACCAAAACTAATCTCTTTTGCTCTTGCTA 298
Query 181 tctctcttacatcctcttcccctgccttagccattccttctctctcctcttctcAGCCAC 240
||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCTCTCTAACTTCCTTTTCCCCTGCCTTAGCCATTCCTTCTCTCTCCTCTTCTCAGCCAC 358
Query 241 TCACTACTCCTTTCACCCAATCCAAGTTTGTGCAGACTGGTCTTCTCAATGGCAAAATTA 300
|||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 359 TCACCACTCCTTTCACCCAATCCAAGTTCGTCCAGACCGGTCTTCTCAATGGCAAAATTA 418
Query 301 GACCTTGCCCTTCCACGAACCCAGGCTGTGTATCCACGAATCCGACCTCATCTTCCTTCT 360
| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 419 GGCCTTGCCCTTCCACGAACCCAGGATGTGTATCGACGAATCCAACCTCATCTTCCTTCT 478
Query 361 CATTTCCATTGACGATCCCAGAAACTGATACACAAGATCCCATTCAGAAACTGAAAGAAG 420
| ||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||
Sbjct 479 CTTTTCCATTGACGATCCCAGAAACCGATACACAGGATCCCATTGAGAAACTGAAAGAAG 538
Query 421 CAATAATGAGCACCCAGAAGAACCCCAAGTTTGTGGTTCTTGAAGATACTCCATACGGGA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 539 CAATAATGAGCACCCAGAAGAACCCCAAGTTTGTGGTTCTTGAAGATACTCCCTATGGGA 598
Query 481 GATATTTGGAGGCAGAGGTAGAAGGAGGAGGATTTAGCAGAGATGTGATGGAGTTTTTGG 540
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGTATGTGGAGGCAGAGGTAGAAGGAGGAGGATTTAGCAGAGATGTGATGGAGTTTTTGG 658
Query 541 TGAAGCAAGATGTGGTTGCTTACAGGTGTATGGCCACTAAGGTTACCTTTGTGTATCCTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGAAGCAAGATGTGGTTGCTTACAGGTGTATGGCCACTAAGGTTACCTTTGTGTATCCTT 718
Query 601 TCACCACTGCTTTTGGAGACTCCAAGGGACAAGAAGAGAGGATGAAGAAGCTCATCGACC 660
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 719 TCACCACTGCTTTTGGAGACTCCAAGGGACAAGAAGAGAGGTTGAAGAAGCTCATCGATC 778
Query 661 AGCTTGGTTGGTATGCTCCTACCTTTGAATCCATGGAGTAAA 702
||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 779 AGCTTGGTTGGTATGCTCCTACCTTTGAATCTATGGAATAAA 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34962966312
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5