BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945608
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24910.1 | Symbols: | Protein of unknown function (DUF579) ... 1328 0.0
> AT4G24910.1 | Symbols: | Protein of unknown function (DUF579)
| chr4:12817954-12818901 REVERSE LENGTH=948
Length=948
Score = 1328 bits (719), Expect = 0.0
Identities = 878/954 (92%), Gaps = 14/954 (1%)
Strand=Plus/Plus
Query 21 ATGCCTCCCCAACTCCATCAATCTTCACTTCCTATTCTCAATCCTCTACTTAGATTCTCA 80
|||||||| ||| | ||||||||||| ||| ||||||||||||||||||| || ||||||
Sbjct 1 ATGCCTCCGCAATTTCATCAATCTTCCCTTTCTATTCTCAATCCTCTACTCAGGTTCTCA 60
Query 81 CCTCCTTCCTCCCCTGATAATCCCAAAAACCAGAGGGTATCAACGATTAAGATGCCTAAA 140
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 61 CCTCCTTCCTCCCCTGATAATCCCAAACACCAGAGGTTATCAACGATTAAGATGCCTAAA 120
Query 141 TTCACTGTATGTAAGCTCATACCTCTTCTTATCTTCGTTCTTTCAAGTCTCTCCGTTCTC 200
||||||||| |||||||||||||||||||||| |||||||| ||||| ||||| ||||||
Sbjct 121 TTCACTGTACGTAAGCTCATACCTCTTCTTATTTTCGTTCTATCAAGCCTCTCTGTTCTC 180
Query 201 CGACTCCTCCGGATTTCATACAAGTCTTCATCTTCTACGTCTCAGTCCTCATCTTCAACC 260
|||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||
Sbjct 181 CGACTCCTCCGGATTTCATACAAGTC-T--TCTTCTAAGTCCCAGTCCTCATCTTCAACC 237
Query 261 ACATTTCATTTGAGTCCAGCTGAGTCCAGTCAGCAGCTCAGGGCTAATGAGGGCCCATA- 319
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 238 ACATTTCGCTTGAGTCCAGCTGATTCCAGTCAGCAGCTCAGGGCTAATGAGGGCCCA-AC 296
Query 320 CGCTCTCATGGAAAAGGAACTGAAGCTCTTATCAGATACCGTTACTCGTAGATCCCCTTG 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 297 CGCTCTCATGGAAAAGGAACTGAAGCTCTTATCAGATACCGTTACTCGTAGATCCCCATG 356
Query 380 CAACGTTCTTGTTTTCGGGTTTGCACCTCAATACCTCATGTTACCTGCGATCAACACTAG 439
|||| |||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct 357 CAACATTCTTGTTTTCGGGTTTGCACCTCAATACCTCATGTTATCTTCAATCAACACTAG 416
Query 440 AGGTATTACCGTCATTCTAGAAGATGTACCTGAAAAGATAATGATACCAAAAGCTGAAGT 499
|||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct 417 AGGTATTACCGTCATTCTGGAAGATGAACCTGCAAAGATAATGATACCAAAAGCTGAAGT 476
Query 500 AAATCCAAACAACACAAGAATCTATAGCTTTAAA-TACCATCAGATGGAAGTGAA-AAAT 557
|||||||||||||||||||||||| ||||| ||| ||||||||||||||||| || ||||
Sbjct 477 AAATCCAAACAACACAAGAATCTACAGCTT-AAAGTACCATCAGATGGAAGT-AAGAAAT 534
Query 558 GCTTACAAACTGCTTCGACATGCACGAGCCAATTCCGCATGCGCACCAAAGATGAATAAT 617
|||||||| ||||||| |||||| ||||| ||| ||||||| |||||||| |||||||||
Sbjct 535 GCTTACAATCTGCTTCAACATGCTCGAGCTAATCCCGCATGTGCACCAAATATGAATAAT 594
Query 618 CTACA--A-GGCTCATCAGCCTGCAAAATGCAACTGCGGGATTTGCCACAGGAAGTACAC 674
| ||| | |||||||||| ||||||| || ||||| |||||||||||||| | ||||||
Sbjct 595 CAACATCAAGGCTCATCAGACTGCAAACTGGAACTGAGGGATTTGCCACAGCAGGTACAC 654
Query 675 AATACCAAATGGGATGTGATAGTAGTTGATGGTCCACGTGGGGACAACTTCGAGGCACCA 734
||||||||||||||||||||||| |||||||| || ||||| || |||| ||| |||||
Sbjct 655 AATACCAAATGGGATGTGATAGTTGTTGATGGCCCCCGTGGAGATGACTTAGAGACACCA 714
Query 735 GGTAGGATGGGGAGTATATATACTGCAGCTGTGTTAGCAAGAAAGGGAAGTAGCAACTCT 794
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 715 GGTAGGATGGGGAGTATATATACTGCAGCTGTGTTAGCAAGAAAAGGAAGTAGCAACTCA 774
Query 795 ACAACAGATGTTTTCGTGCATGATGTGCACAGGACGGCTGAGAAGTGGCTCTCCTGGGAA 854
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 775 ACAACAGATGTTTTCGTGCATGATGTGCACAGGACAGCTGAAAAGTGGCTCTCCTGGGAG 834
Query 855 TTCTTATGTCAGGAGAATCTGGTTTCAGCTAAAGGGAAC-TTCTGGAAATTTAGGATAAA 913
||||| || |||||||||||||||||||||||||| ||| |||||||| |||||||| ||
Sbjct 835 TTCTTGTGCCAGGAGAATCTGGTTTCAGCTAAAGG-AACCTTCTGGAAGTTTAGGATCAA 893
Query 914 GGGACAATCAAATGCATCCAGGTTTTGCTCACCAGAAACAGTCCTCATCAGATA 967
| | ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 894 GCGTCAATCAAATGCATCCAGGTTTTGCTCACCAGAAACAGTCATCATCAGATA 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48526186002
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5