BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945614
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24830.1 | Symbols: | arginosuccinate synthase family | chr... 2357 0.0
> AT4G24830.1 | Symbols: | arginosuccinate synthase family | chr4:12792873-12795974
REVERSE LENGTH=1814
Length=1814
Score = 2357 bits (1276), Expect = 0.0
Identities = 1436/1513 (95%), Gaps = 12/1513 (1%)
Strand=Plus/Plus
Query 21 ATGGCTGAAATCTCGGCGACTTCGTTTCCTTCTTCTTCTTCTTCCTCTGCTCTCG-CGTT 79
||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |
Sbjct 118 ATGGCTGAAATCTCGGCGACTTCGTTT-C--CTTCTTCTTCTTCCTCTGCTCTCGTC-AT 173
Query 80 CCGTACCTCCCACAATGGTAGCTTAAAATGTCAGAATGTAGCTGTTCCAAGAACCT-CTT 138
||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 174 CCGTAGCTCCCACAATGGTAGCTTAAAATGTCAGAATGTAGCTGTTCCAA-AAACTACTT 232
Query 139 CCCAGTTTCAAGAGTTATCGGTGAGACGAAGCCAGCTTGTTGGCAATGCCGTTGTTACCG 198
||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 233 CCCAGTTCCAAGAGTTATCTCTGAAACGAAGCCAGCTTGTTGGCAATGCCGTTGTTACCG 292
Query 199 GTCATGTTACCGGATTCCGCAGCTGCAAGAATCAAGCAATCCGAGCTGTTCTATCCGGTG 258
||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 293 GTCATGTTACCGGATCCCGCAGCTGCAAGAATCAAGCTATTCGAGCTGTTCTATCCGGTG 352
Query 259 ATGGAACTGCCCTGGCTGCTGATTCAAAGGAGGCTGGACTTCGTGGAAAACTTAGAAAA- 317
||||||| ||| || || |||||||||||||||||||||||||||||||||| | ||||
Sbjct 353 ATGGAACCGCCTTGACTACTGATTCAAAGGAGGCTGGACTTCGTGGAAAACTGA-AAAAG 411
Query 318 GTCGTTCTAGCTTACAGTGGAGGCTTGGATACCTCTGTCATTGTGCCATGGCTTAAGGAG 377
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 412 GTCGTTCTAGCTTACAGTGGAGGCTTAGACACCTCTGTCATTGTGCCATGGCTTAAGGAG 471
Query 378 AACTATGGTTGTGAAGTTGTGTGTTTCACCGCCGATGTTGGTCAGGGCATAAAAGAGTTG 437
||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 472 AACTATGGTTGTGAAGTTGTGTGCTTCACTGCTGATGTTGGTCAGGGCATAAAAGAGTTA 531
Query 438 GAGGGTTTAGAACAAAAGGCTAAGGCTAGTGGTGCTTCTCAGTTGGTCGTTAAGGATCTC 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GAGGGTTTAGAACAAAAGGCTAAGGCTAGTGGTGCTTCTCAGTTGGTCGTTAAGGATCTC 591
Query 498 ACAGAGGAGTTTGTGAAAGATTACATATTCCCTTGTCTTAGAGCTGGTGCCATCTATGAA 557
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 592 ACAGAGGAGTTTGTGAAAGATTTCATCTTCCCTTGTCTTAGAGCTGGTGCCATCTATGAA 651
Query 558 CGAAAATACTTGCTTGGTACCTCCATGGCTCGACCTGTCATTGCTAAGGCCATGGTTGAT 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CGAAAATACTTGCTTGGTACCTCCATGGCTCGACCTGTCATTGCTAAGGCCATGGTTGAT 711
Query 618 GTAGCAGCAGAGGTTGGAGCTGATGCCGTTGCACATGGCTGTACTGGCAAAGGAAATGAC 677
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 712 GTAGCAGCAGAGGTTGGAGCTGATGCCGTTGCACATGGGTGTACTGGAAAAGGAAATGAC 771
Query 678 CAGGTTCGGTTTGAGCTCACCTTCTTTTCATTAAACCCTGAACTTAAAGTTGTGGCACCA 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CAGGTTCGGTTTGAGCTCACCTTCTTTTCATTAAACCCTGAACTTAAAGTTGTGGCACCA 831
Query 738 TGGAGAGAATGGGAAATCCAAGGCAGAGAAGATGCTATTGAGTATGCCAAGAAGCATAAC 797
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 832 TGGAGAGAATGGGAAATCCAAGGCCGAGAAGATGCTATTGAGTATGCAAAGAAGCATAAT 891
Query 798 ATTCCCGTCCCAGTGACaaaaaaaTCTATTTACAGCCGGGACAGGAACCTGTGGCACCTT 857
||||||||||||||||||| || || ||||||||||||||||| |||||||||||||||
Sbjct 892 GTTCCCGTCCCAGTGACAAAGAAGTCCATTTACAGCCGGGACAGAAACCTGTGGCACCTT 951
Query 858 AGTCATGAGGGTGATCTATTGGAAGATCCAGCAAATGAGCCAAAGAAAGATATGTACATG 917
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 952 AGTCATGAGGGTGATCTATTGGAAGATCCAGCAAACGAGCCAAAGAAAGATATGTACATG 1011
Query 918 ATGAGTGTAGATCCTGAAGATGCTCCTGATCAGCCTGAATACATCGAGATCGGGATAGAA 977
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 ATGAGTGTGGATCCTGAAGATGCTCCTGATCAGCCTGAATACATCGAGATCGGGATAGAA 1071
Query 978 TCTGGAATTCCAGTGGCACTGAACGGGAAGGCTCTGAGTCCAGCCACACTTCTGGCCGAG 1037
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TCTGGACTTCCAGTGGCGCTGAACGGGAAGGCTCTGAGTCCAGCCACACTTCTGGCCGAG 1131
Query 1038 CTAAACACAATAGGAGGAAAGCACGGGATTGGGCGGATTGACATGGTTGAGAACCGTCTG 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 CTAAACACAATAGGAGGAAAGCACGGGATTGGGCGGATTGACATGGTTGAGAACCGTCTG 1191
Query 1098 GTTGGGATGAAATCACGAGGTGTCTATGAAACTCCTGGAGGCACCATCCTCTTTGCAGCT 1157
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1192 GTTGGGATGAAATCACGAGGTGTGTATGAAACTCCTGGAGGCACTATCCTCTTTGCAGCT 1251
Query 1158 GTACAAGAACTAGAATCCCTCACTCTAGACAGAGAGAGTATTCAGGTAAAAGACTCATTA 1217
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1252 GTACAGGAACTAGAATCCCTCACTCTAGACAGAGAGAGTATTCAGGTAAAAGACACATTA 1311
Query 1218 GCACTGAAATACGCAGAGATGGTCTATGCGGGAAGATGGTTTGATCCGCTTAGGGAGTCC 1277
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1312 GCACTGAAATATGCAGAGATGGTCTACGCAGGAAGATGGTTTGATCCGCTTAGGGAGTCC 1371
Query 1278 ATGGACGCTTTCATGGAGAAGATAACTGAGACAACCACGGGATCCGTGACACTAAAGCTG 1337
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1372 ATGGACGCTTTCATGGAGAAGATAACCGAGACAACCACGGGATCTGTGACACTGAAGCTG 1431
Query 1338 TACAAAGGATCTGTGTCGGTTACAGGGCGTAAGAGTCCTAACAGTCTGTATAGACAGGAC 1397
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1432 TACAAAGGATCTGTGTCGGTTACAGGGCGTCAGAGTCCTAACAGTCTGTATAGACAGGAC 1491
Query 1398 ATATCTTCGTTTGAAAAGAGTGAAATCTATAACCAAGCGGATGCAGCCGGGTTTATTAAT 1457
||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 1492 ATATCTTCGTTTGAAGGGAGTGAGATCTACAACCAAGCGGATGCAGCCGGGTTTATTCGT 1551
Query 1458 ATCTT-CGGGCTTCCAATGAGAGTGAGAGCAATGCTTGAGAAAGGAATCTAGAAAGGGTT 1516
| || |||||||||||||| | | ||||| |||||| ||||| | ||||||| ||||
Sbjct 1552 CT-TTACGGGCTTCCAATGAAAATTAGAGCTATGCTTAAGAAAATTAGCTAGAAATGGTT 1610
Query 1517 T-CATTCATGTCT 1528
| |||||||||||
Sbjct 1611 TTCATTCATGTCT 1623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75401218590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5