BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945626
Length=1327
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24740.1 | Symbols: AFC2, AME1, FC2 | FUS3-complementing gen... 2222 0.0
> AT4G24740.1 | Symbols: AFC2, AME1, FC2 | FUS3-complementing gene
2 | chr4:12754529-12757773 REVERSE LENGTH=1604
Length=1604
Score = 2222 bits (1203), Expect = 0.0
Identities = 1286/1327 (97%), Gaps = 2/1327 (0%)
Strand=Plus/Plus
Query 1 TTTTCTCTGGAATTCTGAGATTATGGAGATGGAGCGTGTGCATGAATTTCCTCATACTAA 60
|||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 101 TTTTCTCT-G-ATTCTGAGATTATGGAGATGGAGCGTGTGCATGAATTCCCTCATACTCA 158
Query 61 CATGGATCGTCGTCCCAGAAAGAGAGCGCGTCTCGGTTGGGATGTGTTGCCTCAGGCAAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 CATGGATCGTCGTCCCAGAAAGAGAGCGCGTCTCGGTTGGGATGTGTTGCCTCAGGCAAC 218
Query 121 CAAGGCTCAGGTAGGAATGTTTTGTGGGCAAGAGATTGGAAATTTATCAAGCTTTGCATC 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 219 CAAGGCTCAGGTAGGAATGTTTTGTGGGCAAGAGATTGGAAATATATCAAGCTTTGCATC 278
Query 181 GTCTGGAGCTCCTTCAGACAATAGTAGCTCTCTTTGTGTTAAGGGTGTGGCTCGAAATGG 240
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 TTCCGGAGCTCCTTCAGACAATAGTAGCTCTCTTTGTGTTAAGGGTGTGGCTCGAAATGG 338
Query 241 TTCGCCCCCATGGCGAGAAGATGATAAGGATGGACATTACATGTTTGAACTGGGAGATGA 300
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 339 TTCTCCCCCATGGCGAGAAGATGATAAGGATGGACATTACATATTTGAACTGGGAGATGA 398
Query 301 CTTAACTCCACGCTATAAAATCTATAGCAAAATGGGCGAGGGTACTTTTGGTCAAGTGCT 360
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 399 CTTAACTCCACGCTATAAAATTTATAGCAAAATGGGGGAAGGTACTTTTGGTCAAGTGCT 458
Query 361 AGAATGTTGGGATAGGGAGAGGAAGGAAATGGTGGCAGTAAAAATTGTCCGTGGTGTGAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 AGAATGTTGGGATAGGGAGAGGAAGGAAATGGTGGCAGTAAAAATTGTCCGTGGTGTGAA 518
Query 421 GAAATACCGCGAGGCCGCTATGATTGAAATTGAAATGCTGCAACAACTTGGTAAACATGA 480
||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 519 GAAATACCGTGAGGCTGCTATGATTGAAATTGAAATGCTGCAACAGCTTGGTAAACATGA 578
Query 481 CAAAGGTGGCAATCGTTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 CAAAGGTGGCAATCGTTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTG 638
Query 541 TATTGTCTTTGAGAAGCTTGGATCAAGTTTATACGATTTTCTTCGGAAAAACAATTATCG 600
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 639 TATTGTATTTGAGAAGCTTGGATCGAGTTTATACGATTTTCTTCGGAAAAACAATTATCG 698
Query 601 CTCCTTTCCCATTGATCTTGTTCGTGAGATTGGCTGGCAACTCTTGGAATGTGTAGCATT 660
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 699 CTCCTTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTCTTGGAATGTGTAGCATT 758
Query 661 TATGCATGACTTGCGCATGATTCATACGGACCTTAAACCAGAAAATATTCTGTTAGTCTC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 TATGCATGACTTGCGCATGATTCATACGGACCTTAAACCAGAAAATATTCTGTTAGTCTC 818
Query 721 CTCGGACTATGTGAAGATTCCTGAGTACAAGGGCTCCCGATTACAAAGGGATGTTTGCTA 780
||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 819 CTCAGACTATGTGAAGATTCCCGAGTACAAGGGGTCCCGATTACAAAGGGATGTATGCTA 878
Query 781 TAAAAGAGTGCCTAAATCAAGTGCAATAAAGGTGATTGATTTTGGTAGCACAACTTATGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 TAAAAGAGTGCCTAAATCAAGTGCAATAAAGGTGATTGATTTTGGTAGCACAACTTATGA 938
Query 841 GCGCCAGGACCAAACCTACATTGTATCAACCAGACATTATAGGGCTCCAGAAGTCATTTT 900
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 939 GCGCCAGGACCAAACCTACATTGTATCAACCAGACATTATAGGGCACCAGAAGTCATTTT 998
Query 901 AGGTCTTGGCTGGAGTTATCCGTGTGATGTTTGGAGCATTGGATGTATCATAGTGGAGCT 960
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 999 AGGTCTTGGCTGGAGTTATCCGTGTGATGTTTGGAGCGTTGGATGTATCATAGTGGAGTT 1058
Query 961 GTGCACGGGTGAAGCATTGTTCCAAACACATGAAAACCTGGAGCATCTAGCGATGATGGA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 GTGCACGGGTGAAGCATTGTTCCAAACACATGAAAACCTGGAGCATCTAGCGATGATGGA 1118
Query 1021 GCGTGTTCTTGGGCCGTTTCCTCAACAAATGCTGAAGAAAGTGGACCGGCACGCAGAGAA 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1119 GCGTGTTCTTGGGCCGTTTCCTCAACAAATGCTGAAGAAAGTGGACCGGCACTCAGAGAA 1178
Query 1081 ATATGTGAGAAGAGGTCGTTTGGATTGGCCGGATGGGGCAACCTCAAGAGATAGCCTGAA 1140
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1179 ATATGTGAGAAGAGGTCGTTTGGATTGGCCAGATGGGGCAACCTCAAGAGATAGCCTGAA 1238
Query 1141 AGCAGTATTGAAGCTCCCTAGGCTTCAGAATCTAATAATGCAACATGTGGACCACTCGGC 1200
|||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1239 GGCAGTATTGAAGCTTCCTCGGCTTCAGAATTTAATAATGCAACATGTGGACCACTCAGC 1298
Query 1201 GGGGGAGTTAATAAATATGTTGCAAGGACTTCTGCGGTTTGATCCGTCAGAGAGACTAAC 1260
|||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||
Sbjct 1299 CGGGGAGTTAATAAATATGGTGCAAGGACTTCTGCGATTTGATCCGTCAGAGAGAATAAC 1358
Query 1261 CGCTCGTGAAGCTTTGAGGCATCCTTTTTTCGCCAGGAGAAGATAGCGGGAGTTCAATTT 1320
||||||||||||| |||||||||| |||||||| ||||||||||||||||| || |||||
Sbjct 1359 CGCTCGTGAAGCTCTGAGGCATCCGTTTTTCGCAAGGAGAAGATAGCGGGACTTGAATTT 1418
Query 1321 GACGAGT 1327
|||||||
Sbjct 1419 GACGAGT 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65310909045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5