BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945635
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24650.1 | Symbols: ATIPT4, IPT4 | isopentenyltransferase 4 ... 1585 0.0
> AT4G24650.1 | Symbols: ATIPT4, IPT4 | isopentenyltransferase
4 | chr4:12720394-12721443 FORWARD LENGTH=1050
Length=1050
Score = 1585 bits (858), Expect = 0.0
Identities = 951/997 (95%), Gaps = 2/997 (0%)
Strand=Plus/Plus
Query 1 GTGTTTATCAGTCTCAATTTACGACATGAATTGTAAAGACAAAATGGTTGTGATCATGGG 60
|||||| ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 48 GTGTTTCTCAATCTCAATTTACGACATGAAGTGTAATGACAAAATGGTTGTGATCATGGG 107
Query 61 TGCCACCGGTTCTGGCAAGTCATCACTCTCGGTTGATCTCGCTTTACATTTCAAAGCCGA 120
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 108 TGCCACCGGTTCTGGCAAGTCATCACTCTCTGTTGATCTCGCTTTACATTTTAAAGCCGA 167
Query 121 GATCATCAACTCTGACAAAATGCAGTTCTATGATGGCTTGAAGATCACCACGAATCAATC 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 168 GATCATCAACTCTGACAAAATGCAGTTCTACGATGGCTTGAAGATCACCACGAATCAATC 227
Query 181 GACCATTTCGGATCGACGTGGAGTGCCACATCACCTTCTCGGTGAACTAAACCCGGAGGC 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 GACCATTGAAGATCGACGTGGAGTGCCACATCACCTTCTCGGTGAACTAAACCCGGAGGC 287
Query 241 TGGAGAAGTCACAGCAGCAGAATTTCGCGTTATGGCGGCTAAAGCCATCTCCGAGATTAC 300
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 288 TGGAGAAGTCACAGCGGCAGAATTTCGCGTTATGGCGGCTGAAGCCATCTCCGAGATTAC 347
Query 301 TCAACGTAAAACA-CTCCCAATCCTTGCCGGTGGATCCAACTCCTACATTCATGCACTCC 359
||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 348 TCAACGTAAAA-AGCTCCCAATCCTTGCCGGTGGATCCAACTCATACATTCATGCTCTCC 406
Query 360 TTGCAAAATCTTATGATCCTGAAAACTATCCGTTTTCTGATCACAAGGGCTCAATCTGCT 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 TTGCAAAATCTTATGACCCTGAAAACTATCCGTTTTCTGATCACAAGGGCTCAATCTGCT 466
Query 420 CGGAGTTGAAATATGATTGTTGTTTCATTTGGATAGATGTGGACCAGCCTGTCTTATTCG 479
| ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 467 CCGAGTTGAAATATGATTGTTGTTTCATTTGGATAGATGTGGATCAGTCTGTGTTATTCG 526
Query 480 AGTATCTTTCTTTGCGTTTGGATGTGATGATGAAGTCAGGTATGTTCGAGGAGATCGCTG 539
||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 527 AGTATCTTTCTTTACGTTTGGATCTTATGATGAAGTCAGGTATGTTCGAGGAGATCGCTG 586
Query 540 AGTTCCACCGCGCTAAGAAGGCCCCGAAAGAGCCATTGGGGTTATGGAAGGCTATAGGAG 599
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 587 AGTTCCACCGCTCTAAGAAGGCCCCGAAAGAGCCATTGGGGATATGGAAGGCTATAGGAG 646
Query 600 TGCAAGAGTTTGATGACTACCTCAAAAAGTACAAGTGGGACGATGACATGGATAAATGGG 659
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 647 TGCAAGAGTTTGATGACTACCTCAAAATGTACAAGTGGGACAATGACATGGATAAATGGG 706
Query 660 ACACTATGAGAAAGGAGGCTTATGAGAAGGCGGTGAGAGCGATCAAAGAAAACACGTTTC 719
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 707 ACCCTATGAGAAAGGAGGCTTATGAGAAGGCGGTGAGAGCCATCAAAGAAAACACATTTC 766
Query 720 AGCTCACAAAGGATCAAATCAAGAAGATCGACAAGTTGAGAAATGCCGGGTGGGACATAA 779
||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 767 AGCTCACAAAGGATCAAATCACGAAGATCAACAAGCTGAGAAATGCCGGGTGGGACATAA 826
Query 780 AGAAGGTGGATGCTACAGCATCGTTTCGAGAGGCAATTAGGGCAGCCAAGGAAGGTGAAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 827 AGAAGGTGGATGCTACAGCATCGTTTCGAGAGGCAATTAGGGCAGCCAAGGAAGGCGAAG 886
Query 840 GTGTAGCCGAGATGCAGAGAAAGATATGGAACAATGAAGTGTTGGAACCGTGTGTGAAGA 899
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 887 GTGTAGCCGAGATGCAGAGAAAGATATGGAACAAGGAAGTGTTGGAACCGTGTGTGAAGA 946
Query 900 TTGTCAAGAGCCACTTGGACCAGCCGATCAACtattattattattatttttatttaATAA 959
|||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |||
Sbjct 947 TTGTCAGGAGCCACTTGGACCAACCGATCAACTATTATTATTATTACTTTTATTTACTAA 1006
Query 960 AAAGACTCTTAAGTCTTAACTAGCAAGGACTCATATC 996
||||| | ||||||||||||||| ||||| |||||
Sbjct 1007 AAAGATTTTTAAGTCTTAACTAGTTTGGACTAATATC 1043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5