BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945637
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24630.1 | Symbols: | DHHC-type zinc finger family protein ... 1991 0.0
AT3G56930.1 | Symbols: | DHHC-type zinc finger family protein ... 122 6e-27
> AT4G24630.1 | Symbols: | DHHC-type zinc finger family protein
| chr4:12714624-12717111 FORWARD LENGTH=1519
Length=1519
Score = 1991 bits (1078), Expect = 0.0
Identities = 1191/1246 (96%), Gaps = 5/1246 (0%)
Strand=Plus/Plus
Query 1 GCTTTATTCTTCTTCTCCCCATGACAAAACGAGTATTCCAAGTCTGGAAAGGAAGCAATA 60
|||||| |||||||||| |||||||| |||| ||||||||||||||||||||||||||||
Sbjct 276 GCTTTAATCTTCTTCTCTCCATGACACAACGGGTATTCCAAGTCTGGAAAGGAAGCAATA 335
Query 61 AATTCATCCTTGGTGGGAGATTGATATTTGGACCAGATGCTAGGTCACTGCCTCTTACCT 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 AATTCATCCTGGGTGGGAGATTGATATTTGGACCAGATGCTAGGTCACTGCCTCTTACCT 395
Query 121 TGCTATTGATCATAGTTCCAGTTGTTTTGTTCTGTGTATTTGTAGCAAGGCACCTTCGCC 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 396 TGCTATTGATCATAGTTCCGGTTGTTTTGTTCTGTGTATTTGTAGCAAGGCACCTTCGCC 455
Query 181 ATGAGTTCTCTCCCTACAATGCGGGATATGCTATCTTGGTGGTAGCAATTCTTTTCACTA 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 456 ATGAGTTCTCTCCCTACAATGCGGGATATGCTATCATGGTGGTAGCAATTCTTTTCACTA 515
Query 241 TTTATGTATTGATCCTCCTCTTCTTCACATCTGCACGAGATCCTGGTATTGTTCCTCGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TTTATGTATTGATCCTCCTCTTCTTCACATCTGCACGAGATCCTGGTATTGTTCCTCGAA 575
Query 301 ATTTGCATCCACCAGAGGAAGAACTACGCTATGAGACAACAGTATCAGCTGATGGAAGAC 360
||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 576 ATTCGCATCCACCAGAGGAAGACCTACGTTATGAGACAACTGTATCAGCTGATGGAAGAC 635
Query 361 AAACACCAAGTGTTCAAATTCCCAGGACGAAAGAAGTCATGGTTAATGGTGTTTCTGTTA 420
||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 636 AAACACCGAGTGTTCAAATTCCCAGGACGAAAGAAGTCATTGTTAATGGCGTTTCTGTTA 695
Query 421 GAGTGAAATACTGTGATACATGCATGCTTTACAGGCCTCCCCGCTGCTCTCATTGTTCCA 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 696 GAGTGAAATACTGTGATACATGCATGCTTTACAGGCCTCCTCGCTGCTCTCATTGCTCCA 755
Query 481 TATGCAACAACTGTGTTGAGCGATTTGATCATCATTGCCCATGGGTGGGCCAATGCATTG 540
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 756 TATGCAACAACTGTGTTGAGCGCTTTGATCATCATTGCCCATGGGTGGGACAATGCATTG 815
Query 541 GACTGAGAAACTATAGGTATTTCTTTATGTTTGTTTCTTCGTCAACACTTCTCTGCGTCT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 816 GACTGAGAAACTATAGGTATTTCTTTATGTTTGTTTCTTCGTCAACACTTCTCTGCATCT 875
Query 601 ATATTTTCTCGATGTCGGCCATATACATCAAGATTCTGATGAATGATCAACAAGGAACTG 660
||||||||||||||||||| |||||||||||||||||||| || ||||||||| |||||
Sbjct 876 ATATTTTCTCGATGTCGGCGGTATACATCAAGATTCTGATGGATCATCAACAAGCAACTG 935
Query 661 TGTGGAGGGCAATGAAAGAATCACCTTGGTCAGTTGTGCTGATGATATATTGCTTTATTG 720
||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 936 TGTGGAGGGCAATGAAAGAATCACCTTGGGCTGTTGTGTTGATGATATATTGCTTTATTG 995
Query 721 CCCTATGGTTTGTTGGAGGGCTCACAGCGTTTCACTTGTACCTCATAAGTACAAACCAGA 780
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 CCCTGTGGTTTGTTGGAGGGCTCACAGCGTTTCACTTGTACCTCATAAGTACAAACCAGA 1055
Query 781 CAACCTATGAGAAACTCCGGTACAGATCATCACACAGCAGGAGCATTGTATATAACCGTG 840
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1056 CAACCTATGAGAAACTCCGGTACAGGTCATCACACAGCAGGAGCATTGTCTATAACCGTG 1115
Query 841 GCTGTCCAAACAATTTCCTGGAAGTATTTTGCTCAAAGGTGAAGCCCTCGAGGAACAACT 900
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1116 GCTGTCCAAACAATTTCCTGGAAGTTTTTTGCTCAAAGGTGAAGCCCTCGAGGAACAACT 1175
Query 901 TTAGAGCCTTCATCGAAGAAGAACCTCCAAGAGTTGTTACCCTGCCTAGCACCACCAGGG 960
||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||
Sbjct 1176 TTAGAGCCTTCATCGAAGAAGAACCCCCAAGAGTTATTACTCTGCCTAGCACCACCAGGG 1235
Query 961 AATCAGGGGAAGCAGAGGATGAAAATGGG-CCTCGGCGACAGAAAGTGGAAGACGACCTA 1019
|||||||||||||||| || ||||||| | || ||||||||||||||||||||||| |||
Sbjct 1236 AATCAGGGGAAGCAGAAGACGAAAATGTGACC-CGGCGACAGAAAGTGGAAGACGATCTA 1294
Query 1020 GACATTGGAGAAGATATTATTAATCTCTCACAGCGTTGTAATGCAGAAGAGGCCAACAAC 1079
||||||||||| ||| | || |||||||||| |||||||||||||||||| |||||||||
Sbjct 1295 GACATTGGAGACGATCTAATGAATCTCTCACGGCGTTGTAATGCAGAAGATGCCAACAAC 1354
Query 1080 AATCAGCCTCATCACACATTGGACATTGACCATGAGAGAGCAGGCTCGATAAGGACAGAA 1139
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1355 AATCAGCCTCATCACACATTGGACATAGACCATGAGAGAGCAGGCTCGATAAGGACAGAA 1414
Query 1140 GCAAGGCATGGAAGCTGGGGAAGAAGAAGTGGGAGCTGGGATGTAGCAGCAGCAACAGAT 1199
||||| |||| |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1415 GCAAGACATGAAAGCTGGGGAAGAAGAAGTGGGAGCTGGGATGTAGCAGCA--A-CAGAT 1471
Query 1200 GTGAGGGAAAGCCGAAGCTACGCAACAGCAAAGGAAGCAAGGGGAT 1245
||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 1472 GTGAGGGAAAGTCGAAGCTACGCAACAGCAAAGGATGGAAGGGGAT 1517
> AT3G56930.1 | Symbols: | DHHC-type zinc finger family protein
| chr3:21073495-21076314 FORWARD LENGTH=2073
Length=2073
Score = 122 bits (66), Expect = 6e-27
Identities = 124/152 (82%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 422 AGTGAAATACTGTGATACATGCATGCTTTACAGGCCTCCCCGCTGC-TCTCATTGTTCCA 480
|||||||| |||||| || || |||||||| | || || | || |||||||||||||
Sbjct 742 AGTGAAATTCTGTGACACTTGTTTGCTTTACCGTCCACCTAG-AGCTTCTCATTGTTCCA 800
Query 481 TATGCAACAACTGTGTTGAGCGATTTGATCATCATTGCCCATGGGTGGGCCAATGCATTG 540
|||||||||||||||| || ||||||||||||| ||||| ||||| ||||| |||||||
Sbjct 801 TATGCAACAACTGTGTCCAGAGATTTGATCATCACTGCCCTTGGGTTGGCCAGTGCATTG 860
Query 541 GACTGAGAAACTATAGGTAT-TTCTTTATGTT 571
|| || |||| || ||| | ||||| |||||
Sbjct 861 GAGTGCGAAATTACCGGT-TCTTCTTCATGTT 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62298876345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5