BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945643
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24570.1 | Symbols: DIC2 | dicarboxylate carrier 2 | chr4:12... 1533 0.0
AT2G22500.1 | Symbols: UCP5, ATPUMP5, DIC1 | uncoupling protein... 191 1e-47
> AT4G24570.1 | Symbols: DIC2 | dicarboxylate carrier 2 | chr4:12686459-12687650
FORWARD LENGTH=1192
Length=1192
Score = 1533 bits (830), Expect = 0.0
Identities = 944/998 (95%), Gaps = 11/998 (1%)
Strand=Plus/Plus
Query 1 TTCCCTCTTC-CT-TCCAATTTCACAACCATGGGCGTCAAAAGTTTTGTAGAAGGTGGGA 58
||| |||||| || |||||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 59 TTCTCTCTTCTCTCTCCAATTTCACAACAATGGGAGTCAAAAGTTTCGTTGAAGGTGGGA 118
Query 59 TTGCTTCCGTAATCGCCGGTTGCTCCACTCACCCTCTCGATCTCATCAAGGTTCGTCTTC 118
|||| || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 119 TTGCCTCTGTAATCGCCGGTTGCTCTACTCACCCTCTCGATCTAATCAAGGTTCGTCTTC 178
Query 119 AGCTTCACGGCGAAACTCCTTCCACCACCACCGTCACTCTCCTCCGTCCAGCTCTCGCTT 178
|||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGCTTCACGGTGAAGCACCTTCCACCACCACCGTCACTCTCCTCCGTCCAGCTCTCGCTT 238
Query 179 TCCCCAATTCTTCTCCTGCAGCTTTTCTTGCCGAGACAACTTCTTCCGTTCCCAAAGTTG 238
|||||||||||||||||||||| |||| || || || |||||||| || |||||||| |
Sbjct 239 TCCCCAATTCTTCTCCTGCAGC-TTTCCTG--GAAACGACTTCTTCAGTCCCCAAAGTAG 295
Query 239 GACCGATCTCACTCGGAATCAACATAGTCAAATCGGAAGGCGCCGCCGCGTTATTCTCCG 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 296 GACCGATCTCACTCGGAATCAACATAGTCAAATCGGAAGGCGCCGCCGCGTTATTCTCAG 355
Query 299 GCGTCTCCGCTACACTTCTCCGACAGACGTTATATTCCACCACCAGGATGGGTCTATACG 358
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 356 GAGTCTCCGCTACACTTCTCCGTCAGACGTTATATTCCACCACCAGGATGGGTCTATACG 415
Query 359 AAGTGCTTAAGAACAAATGGACTGATCCTGAGTCAGGGAAGCTGAATCTGCCTAGGAAGA 418
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 416 AAGTGCTTAAGAACAAATGGACTGATCCTGAGTCAGGGAAGTTGAATCTGAGTAGGAAGA 475
Query 419 TCGGTGCAGGGCTAGTCGCTGGAGGTATCGGAGCCGCCGTTGGAAATCCAGCTGACGTGG 478
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 476 TCGGTGCAGGGCTAGTCGCTGGTGGAATCGGAGCCGCCGTTGGAAATCCAGCTGACGTGG 535
Query 479 CGATGGTTAGGATGCAAGCTGACGGGAGGCTT-CCTTTAGCGCAGCGTCGTAACTACGCC 537
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 536 CGATGGTTAGGATGCAAGCTGACGGGAGG-TTACCTTTAGCGCAACGTCGTAACTACGCC 594
Query 538 GGAGTAGGAGACGCAATCAAGAGCATGGTTAAGGGAGAAGGCGTAACGAGCTTATGGCGT 597
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 595 GGAGTAGGAGACGCAATCAGGAGCATGGTTAAGGGAGAAGGCGTAACGAGCTTGTGGCGA 654
Query 598 GGCTCGGCGTTGACGATTAACCGAGCCATGATTGTGACGGCGGCTCAGCTAGCGTCGTAC 657
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 655 GGCTCGGCGTTGACGATTAACCGAGCGATGATTGTGACGGCGGCTCAGCTAGCGTCTTAC 714
Query 658 GATCAGTTCAAGGAAGGGATATTGGAGAATGGTGTGATGAAGGATGGGTTAGGGACTCAC 717
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 715 GATCAGTTCAAGGAAGGGATATTGGAGAATGGTGTGATGAATGATGGGCTAGGGACTCAC 774
Query 718 GTGGTGGCGAGTTTCGCCGCGGGGTTTGTTGCTTCGGTGGCGTCTAATCCGGTGGATGTG 777
||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 775 GTGGTAGCGAGTTTTGCGGCGGGGTTTGTTGCTTCGGTTGCGTCTAATCCGGTGGATGTG 834
Query 778 ATAAAGACGAGAGTGATGAATATGAAGGTGGGAGCGTACGACGGCGCGTGGGATTGTGCG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ATAAAGACGAGAGTGATGAATATGAAGGTGGGAGCGTACGACGGCGCGTGGGATTGTGCG 894
Query 838 GTGAAGACGGT-AAGAGCAGAAGGAGCAATGGCT-TTATATAAAGGCTTTGTTCCTACAG 895
||||||||||| || ||| |||||||| |||||| || ||||||||||||||||||||||
Sbjct 895 GTGAAGACGGTTAA-AGCGGAAGGAGCCATGGCTCTT-TATAAAGGCTTTGTTCCTACAG 952
Query 896 TTTGTAGGCAGGGTCCTTTCACTGTTGTTCTCTTCGTTACGTTGGAGCAAGTCAGGAAGC 955
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 953 TTTGTAGGCAAGGTCCTTTCACTGTTGTTCTCTTCGTTACGTTGGAGCAAGTTAGGAAGC 1012
Query 956 TGCTTCGAGATTTTTGATACAATTCTTTTATTGATGAT 993
|||||||||||||||||||| |||||||||||||||||
Sbjct 1013 TGCTTCGAGATTTTTGATACCATTCTTTTATTGATGAT 1050
> AT2G22500.1 | Symbols: UCP5, ATPUMP5, DIC1 | uncoupling protein
5 | chr2:9563224-9564751 REVERSE LENGTH=1528
Length=1528
Score = 191 bits (103), Expect = 1e-47
Identities = 308/404 (76%), Gaps = 26/404 (6%)
Strand=Plus/Plus
Query 418 ATCGGTGCAGG-GCTAGTCGCTGGAGGTATCGGAGCCGCCGTTGGAAATCCAGCTGACGT 476
|||||||| || || | |||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct 646 ATCGGTGCCGGAGCCA-TCGCCGGAGCAATCGGAGCCGCCGTTGGGAATCCTGCTGACGT 704
Query 477 GGCGATGGTTAGGATGCAAGCTGACGGGAGGCTT-CC-TTTAGC-GCAGCGTCGTAACTA 533
||||||||| ||||||||||| || || | || || || | | | | | | |||||
Sbjct 705 GGCGATGGTGAGGATGCAAGCCGA-TGGTCGTTTACCGTTGA-CTG-ATAGAAGAAACTA 761
Query 534 CGCCGGAGTAGGAGACGCAATCAAG-AGCATGGTTAAG-GGAGAAGGCGTAACGAGC-TT 590
| | || |||||| |||| | | ||| || | || |||||||| ||| | ||
Sbjct 762 CAAAAGCGTTTTAGACGCGATCACGCA-AATGATT-CGCGGTGAAGGCGTTACG-TCGTT 818
Query 591 ATGGCGTGGCTCGGCGTTGACGATTAACCGAGCCATGATTGTGACGGCGGCTCAGCTAGC 650
||| | || ||| | |||||||| ||| |||| ||| |||||||| | | ||| | ||
Sbjct 819 GTGGAGAGGATCGTCTTTGACGATAAACAGAGCAATGCTTGTGACGTCATCGCAGTTGGC 878
Query 651 GTCGTACGA-TCAGTTCAAGGAAG-GGATATTGGAG-AATGGTGTGATGAAGGATGGG-T 706
||||| || || ||| || | || ||| |||||| || ||| || |||| |||||| |
Sbjct 879 TTCGTATGATTCTGTT-AAAG-AGACGATTTTGGAGAAAGGGT-TGTTGAAAGATGGGCT 935
Query 707 TAGGGACTCACGTGGT-GGCGAGTTTCGCCGCGGGGTTTGTTGCTTCG-GTGGCGTCTAA 764
| |||||||| || || |||||||||||| |||||||||||||| | || ||| |||
Sbjct 936 T-GGGACTCATGT-GTCGGCGAGTTTCGCGGCGGGGTTTGTTGC-GAGCGTTGCGAGTAA 992
Query 765 TCCGGTGGATGTGATAAAGACGAGAGTGATGAATATGAAGGTGG 808
||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 993 TCCTGTTGATGTGATTAAGACGAGAGTGATGAATATGAAGGTGG 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5