BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945645
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24550.2 | Symbols: | Clathrin adaptor complexes medium sub... 2348 0.0
> AT4G24550.2 | Symbols: | Clathrin adaptor complexes medium subunit
family protein | chr4:12675734-12679040 FORWARD LENGTH=1632
Length=1632
Score = 2348 bits (1271), Expect = 0.0
Identities = 1356/1398 (97%), Gaps = 2/1398 (0%)
Strand=Plus/Plus
Query 1 TCGGATTCCACCGC--TAAGGAACGATGATGATCTCTCAGTTCTTCGTCTTATCTCAGCG 58
||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 115 TCGGAATCCACCGCTATAAGGAACGATGATGATCTCCCAATTCTTCGTCTTATCTCAGCG 174
Query 59 AGGAGATAACATCGTCTTCCGTGACTACCGGGCTGAGGTACCGAAAGGCAGTACAGAGAC 118
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 175 AGGAGATAACATCGTCTTCCGTGACTACCGGGCTGAGGTACCCAAAGGAAGTACAGAGAC 234
Query 119 TTTCTTCCGTAAAGTCAAGTTCTGGAAGGAGGATGGCAATGCAGAGGCGCCACCTATCTT 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 ATTCTTCCGTAAAGTCAAGTTCTGGAAGGAGGATGGCAATGCAGAGGCGCCACCTATCTT 294
Query 179 TAATGTCGATGGCGTGAACTACTTCCATGTCAAGGTTGTTGGTCTATATTTTGTTGCGAC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TAATGTCGATGGCGTGAACTACTTCCATGTCAAGGTTGTTGGTCTATATTTTGTTGCGAC 354
Query 239 AACGAGAGTTAACGTGTCACCCTCTCTTGTTTTGGAGCTTCTACAAAGGATTGCTCGTGT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AACGAGAGTTAACGTGTCACCCTCTCTTGTTTTGGAGCTTCTACAAAGGATTGCTCGTGT 414
Query 299 TATTAAGGATTATCTTGGTGTTTTGAATGAAGATTCATTCAGGAAAAACTTTGTGCTCGT 358
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 415 TATTAAGGATTATCTTGGTGTTCTGAATGAAGATTCATTCAGGAAAAACTTTGTGCTCGT 474
Query 359 GTATGAGTTGCTTGACGAAGTTATTGATTTTGGTTACGTGCAAACCACATCTACCGAGGT 418
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 475 GTATGAGTTGCTTGATGAAGTTATTGATTTTGGTTACGTGCAAACTACATCTACCGAAGT 534
Query 419 TTTGAAATCCTATATATTCAATGAGCCAATTGTGGTTGCTCCTGCCCGCCTTCAGCCTAT 478
||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 535 TTTGAAATCTTATATATTCAATGAGCCGATTGTGGTTTCTCCTGCCCGCCTTCAGCCTAT 594
Query 479 CGATCCTGCTGCCATTTTCACACAAGGAAACAAAAGAATGCCTGGAACTGCAGTTACAAA 538
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 595 TGATCCTGCTGCCATTTTCACACAAGGAGCCAAAAGAATGCCTGGAACTGCAGTTACAAA 654
Query 539 ATCGGTTGTAGCTAATGATCCTGGGGGTCGGAGAAGAGAGGAAATTTTTGTGGACATTAT 598
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 655 ATCGGTTGTGGCTAATGATCCTGGGGGTCGGAGAAGAGAGGAAATTTTTGTGGACATCAT 714
Query 599 CGAGAAAATCAGTGTTACTTTTAGTTCAAGCGGCTATATACTGACTTCTGAGATTGATGG 658
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 715 CGAGAAAATCAGTGTTACTTTTAGTTCAAGCGGATATATACTGACTTCTGAGATTGATGG 774
Query 659 AACCATTCAAATGAAGAGCTATCTTTCTGGTAATCCAGAAATCCGTTTAGCTCTTAATGA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CACCATTCAAATGAAGAGCTATCTTTCTGGTAATCCAGAAATCCGTTTAGCTCTTAATGA 834
Query 719 AGACCTAAACATAGGAAGAGGAGGGAGATCAGTATATGATTATAGGAGTTCTTCAGGTTC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AGACCTAAACATAGGAAGAGGAGGGAGATCAGTATATGATTATAGGAGTTCTTCAGGTTC 894
Query 779 AGGGGTGATACTTGATGATTGTAACTTTCATGAGTCTGTTCGTCTGGATAGCTTTGATTC 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 895 AGGGGTGATACTTGATGATTGTAACTTTCATGAGTCTGTTCGTCTGGATAGCTTCGATTC 954
Query 839 AGATAGAACTTTGTCCCTGGTTCCACCGGATGGTGAATTTCCAGTAATGAATTACCGTAT 898
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 955 AGATAGAACTTTGTCCCTGGTTCCACCAGATGGTGAATTTCCAGTAATGAATTACCGTAT 1014
Query 899 GACCCAGGAGTTCAAGCCTCCTTTTCATGTTAATACCTTGATTGAAGAGGCCGGGCGCCT 958
||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1015 GACTCAGGAGTTCAAGCCTCCTTTTCATGTTAATACCTTGATTGAAGAGGCTGGACGTCT 1074
Query 959 TAAGGCTGAAGTGATTATTAAAATACGAGCTGAGTTCCCTTCTGACATAATCGCAAACAC 1018
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 1075 TAAGGCTGAAGTGATTATTAAAATACGCGCTGAGTTCCCTTCAGACATAATTGCAAACAC 1134
Query 1019 AATTACTGTTCAGATGCCATTGCCAAATTATACTTCCAGGGCTAGTTTTGAGTTAGAACC 1078
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AATCACTGTTCAGATGCCATTGCCAAATTATACTTCCAGGGCTAGTTTTGAGTTAGAACC 1194
Query 1079 CGGTGCGGCTGGACAGAGGACAGATTTCAAGGAATCCAGCAAAATGCTTGAATGGAATTT 1138
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1195 CGGTGCTGCTGGACAGAGGACAGATTTCAAGGAATCCAACAAAATGCTTGAATGGAATTT 1254
Query 1139 AAAGAAGATTGTTGGCGGGGGTGAGCATACACTGCGTGCAAAGCTGACATTTTCACAGGA 1198
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1255 AAAAAAGATTGTTGGCGGGGGTGAGCATACACTGCGTGCAAAGCTTACATTTTCACAGGA 1314
Query 1199 ATTTCATGGTAATATCACAAAGGAAGCAGGGCCAGTCAGCATGACGTTCACGATACCTAT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 ATTTCATGGTAATATCACAAAGGAAGCAGGGCCAGTCAGCATGACGTTCACGATACCTAT 1374
Query 1259 GTACAATGTTTCTAAACTTCAGGTCAAATACTTGCAGATAGCAAAGAAATCAAGTAGTTA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GTACAATGTTTCTAAACTTCAGGTCAAATACTTGCAGATAGCAAAGAAATCAAGTAGTTA 1434
Query 1319 TAATCCATATCGTTGGGTAAGATACGTTACACAGGCCAATTCATATGTGGCTAGGATATG 1378
|||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||||||
Sbjct 1435 TAATCCATATCGTTGGGTGAGATATGTGACACAGGCGAATTCTTATGTGGCTAGGATATG 1494
Query 1379 ACCTGCTTTCAGATAATG 1396
||||| ||||||||||||
Sbjct 1495 ACCTGTTTTCAGATAATG 1512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68925348285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5