BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945660
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24400.1 | Symbols: CIPK8, SnRK3.13, PKS11, ATCIPK8 | CBL-in... 2263 0.0
> AT4G24400.1 | Symbols: CIPK8, SnRK3.13, PKS11, ATCIPK8 | CBL-interacting
protein kinase 8 | chr4:12617256-12620684 FORWARD
LENGTH=1664
Length=1664
Score = 2263 bits (1225), Expect = 0.0
Identities = 1336/1389 (96%), Gaps = 10/1389 (1%)
Strand=Plus/Plus
Query 1 TTGAAATCGAGTAGAAGC---AGAG---ATGGTGGTAAGGAAGGTGGGCAAGTATGAATT 54
||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 96 TTGAAATTGAGTAGAAGCAGAAGAGAATATGGTGGTAAGGAAGGTGGGCAAGTATGAATT 155
Query 55 AGGTAGAACAATCGGCGAAGGTACCTTCGCTAAAGTCAAGTTCGCTCAGAACACAGAGAC 114
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 156 AGGTAGAACAATCGGCGAAGGTACTTTCGCTAAAGTCAAGTTCGCTCAGAATACAGAGAC 215
Query 115 CGGTGAGAGCGTCGCCATGAAAATCGTGGATCGTAGTACCATCATCAAACGCAAGATGGT 174
|||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 216 CGGTGAGAGCGTCGCCATGAAAATCGTGGATCGTAGCACAATCATCAAGCGCAAGATGGT 275
Query 175 TGATCAGATTAAGAGAGAGATCTCGATTATGAAGCTTGTTCGTCATCCTTGTGTTGTTCG 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 GGATCAGATTAAGAGAGAGATCTCGATTATGAAGCTTGTTCGTCATCCTTGTGTTGTTCG 335
Query 235 TCTTTATGAGGTTCTAGCAAGCCGCACAAAGATTTATATCATCCTGGAGTACATTACTGG 294
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 336 TCTTTATGAGGTTCTAGCAAGCCGTACAAAGATTTATATCATCCTGGAGTACATTACTGG 395
Query 295 TGGTGAACTGTTTGATAAAATTGTTCGTAATGGACGACTTGGTGAATCAGAAGCTAGGAA 354
|||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct 396 TGGTGAACTGTTTGATAAGATTGTTCGTAATGGACGACTTAGTGAGTCAGAAGCTAGGAA 455
Query 355 ATACTTTCAACAGCTTATTGACGGAGTTGATTACTGTCATAGTAAAGGTGTCTACCACAG 414
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 456 ATACTTTCACCAGCTTATTGATGGAGTTGATTACTGTCATAGTAAAGGTGTTTACCACAG 515
Query 415 AGATCTAAAGCCGGAAAATCTTCTGCTGGACTCTCAAGGAAATCTCAAGATATCTGATTT 474
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 516 AGATCTAAAGCCGGAAAATCTTCTGTTGGATTCTCAAGGAAATCTCAAGATATCTGATTT 575
Query 475 TGGTCTCAGTGCATTACCAGAGCAAGGAGTTACCATCCTAAAGACAACATGTGGAACTCC 534
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 576 TGGCCTCAGTGCATTACCTGAACAAGGAGTTACCATCCTAAAGACAACATGTGGAACTCC 635
Query 535 CAATTACGTTGCTCCTGAGGTTCTCAGTCACAAGGGTTACAATGGTGCCGTGGCAGATGT 594
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 636 CAATTACGTTGCTCCTGAGGTTCTCAGTCACAAGGGTTACAATGGTGCCGTTGCAGATAT 695
Query 595 CTGGTCCTGTGGGATCATCCTTTATGTTCTTATGGCAGGATATCTTCCATTTGATGAAAT 654
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 TTGGTCCTGTGGGGTCATCCTTTATGTTCTTATGGCAGGATATCTTCCATTTGATGAAAT 755
Query 655 GGATCTACCAACTTTATATAGTAAGATCGACAAAGCTGACTTCGCTTGCCCCTCATATTT 714
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 756 GGATCTACCAACTTTATATAGTAAGATCGACAAAGCTGAGTTCTCTTGCCCCTCATATTT 815
Query 715 TGCCTTGGGTGCAAAGTCCTTGATTAATAGAATTTTGGATCCAAATCCTGAAACTCGAAT 774
|||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 816 TGCCCTGGGGGCAAAGTCCTTGATTAATAGAATTTTGGATCCAAATCCAGAAACTCGGAT 875
Query 775 TACAATTGCAGAAATCAGGAAAGATGAGTGGTTTTTAAAGGATTACACTCCTGTACAACT 834
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 876 TACAATTGCAGAAATCAGGAAAGATGAGTGGTTTCTAAAGGATTACACTCCTGTACAACT 935
Query 835 TATCGATTACGAACATGTAAACCTGGATGATGTATATGCTGCTTTTGATGATCCGGAGGA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 TATCGATTACGAACATGTAAACCTGGATGATGTATATGCTGCTTTTGATGATCCGGAGGA 995
Query 895 ACATACATATGCACAGGATGGAAC-AGGGTACACGGGTCCACTGACTCTAAATGCGTTTG 953
||| |||||||||||||||||||| || | |||| |||||||| ||||||||||||||||
Sbjct 996 ACAAACATATGCACAGGATGGAACAAGAG-ACACAGGTCCACTAACTCTAAATGCGTTTG 1054
Query 954 ACCTAATTATTCTATCTCAGGGCCTGAACCTCGCAACTCTTTTTGACCGTGGAAAGGACT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 ACCTAATTATTCTATCTCAGGGCCTGAACCTCGCAACTCTTTTTGACCGTGGAAAGGACT 1114
Query 1014 CCATGAAGCACCAGACAAGGTTCATCTCACACAAGCCAGCAAACGTGGTTCTCTCAAGCA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 CCATGAAGCACCAGACAAGGTTCATCTCACACAAGCCAGCAAACGTGGTTCTCTCAAGCA 1174
Query 1074 TGGAAGTTGTGTCGCAGTCTATGGGCTTTAAGACACACATTCGTAATTACAAGATGAGAG 1133
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 TGGAAGTTGTGTCACAGTCTATGGGCTTTAAGACACACATTCGTAATTACAAGATGAGAG 1234
Query 1134 TCGAAGGATTATCTGCAAATAAGACGTCTCATTTCTCTGTCATTCTAGAAGTATTCAAAG 1193
| ||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||
Sbjct 1235 TGGAAGGATTATCTGCAAATAAGACATCTCATTTCTCCGTCATACTAGAAGTCTTCAAAG 1294
Query 1194 TTGCACCATCAATACTCATGGTAGACATTCAAAATGCAGCAGGAGACGCAGAAGAATACC 1253
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 TTGCACCATCAATTCTCATGGTAGACATTCAAAATGCAGCAGGAGACGCAGAAGAATACC 1354
Query 1254 TTAAGTTCTACAAGACTTTTTGTAGTAAGCTTGATGACATCATTTGGAAGCCGCCAGATG 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 TTAAGTTCTACAAGACTTTTTGTAGTAAGCTTGATGACATCATTTGGAAGCCGCCAGATG 1414
Query 1314 CATCTATGAGAAATCGAGTCACCAAGGCCAAGAGTAAAAGACGTTGAATCCATGTGTGT- 1372
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1415 CATCTATGAGAAATCGAGTCACCAAGGCCAAGAGTAAAAGACGTTGAATCCACGTGCGTG 1474
Query 1373 -TATTCAAG 1380
||||||||
Sbjct 1475 GTATTCAAG 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5