BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945666
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24330.1 | Symbols: | Protein of unknown function (DUF1682)... 2377 0.0
> AT4G24330.1 | Symbols: | Protein of unknown function (DUF1682)
| chr4:12603521-12606328 REVERSE LENGTH=1863
Length=1863
Score = 2377 bits (1287), Expect = 0.0
Identities = 1440/1512 (95%), Gaps = 18/1512 (1%)
Strand=Plus/Plus
Query 1 TCTTCTTCTCTCCGGATCCAAACAATGAATC-TC-C-TTTCTCTCTTCTCCATCGCTCTG 57
|||||||||||||||||||||| |||||||| || | |||||||||||||||| ||||||
Sbjct 77 TCTTCTTCTCTCCGGATCCAAA-AATGAATCGTCTCTTTTCTCTCTTCTCCATAGCTCTG 135
Query 58 ATCGCTTTCCTCTGCCTTCATCATCGTGTCCTCGCTTC-T--TCTTCCGCCTTCGAAGGT 114
||||||||||||||||| || |||| ||| |||||||| | ||||||| ||||||||||
Sbjct 136 ATCGCTTTCCTCTGCCTCCACCATCATGTTCTCGCTTCTTCCTCTTCCGACTTCGAAGGT 195
Query 115 TTCGATGCTGAAGACGACGATGTTTTAGACGATTCCACTGAGCTTCACCACTCTCTCCGT 174
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 196 TTCGATGCTGAAGACGACGATGTTTCAGAAGATTCCACTGAGCTTCACCACTCTCTCCGT 255
Query 175 CCTCCTCTTCTGACTCAGTCTGAGTCAACGGTTCTGGATCTGGACCCATCTTCCGATTCC 234
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 256 CCTCCTCTTCTGACTCAGTCTGAGTCAACGGTTCTGGATCTGGACCCATCTCCCGATTCT 315
Query 235 GATTCTACTACTCCGGCATCTAAATCGGATCCTCCCACTCAGACCGTGAAGCCTTC-T-- 291
|| | | ||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 316 GA-T-T-CTACTCCTGCATCTAAATCTGATCCTCCCACTCAGACCGTGAAGCCTTCGTCC 372
Query 292 TCCATCTCCTTCGATTACTGGGATGAAGATGAGTTCGAAGGATTGCCGGAGGATGAGAAA 351
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 373 TCCATCTCCTTCGATTACTGGGATGAAGATGAGTTCGAAGGATTGCCGGAGGACGAGAAA 432
Query 352 TCGACGGAGTCTCCGGTTATTTCCGATGATGCCT-CTCCTGCC-GCCGATCCACAGACGC 409
|| ||||||||||||||| |||||||||| |||| || || || ||||||||||||||||
Sbjct 433 TCTACGGAGTCTCCGGTTTTTTCCGATGACGCCTCCT-CT-CCTGCCGATCCACAGACGC 490
Query 410 CAGATCTTGAGTCTGCTTCAGAAACTGCAGATACTGACATTCCGAAGAAGAAGCAATCGT 469
| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 491 CGGATCTTGAGTCTGCTTCAGAAACTCCAGATACTGACATTCCGAAGAAGATGCAATCGT 550
Query 470 ACACGGTGGAGATCGTTTGCGTCTCTATATTGATTGGTTACGCAATCAATTACTTCACTG 529
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 551 ACACTGTGGAGATCGTTTGCGTCTCTATATTGATTGGTTACGCTATCAATTACTTCACTG 610
Query 530 GTAAACGTGAGAATGAAAACCTCGCTTTGGCTTGGGCTTCCAAATTTGGTCTTAAAGATA 589
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GTAAACGTGAAAATGAGAACCTCGCTTTGGCTTGGGCTTCCAAATTTGGTCTTAAAGATA 670
Query 590 CCATTTTTGAGAAAAACTTCAGTTTGCTTGGAGTTGGTGAAGGAGAAGACTCTCCTTTGT 649
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 CGATTTTTGAGAAGAACTTCAGTTTGCTTGGAGTTGGTGAAGGAGAAGACTCTCCTTTGT 730
Query 650 TGCTCAAAGAAGCGACGAATGTGTTTAAGTTCTATGCGAGTGGGCGTAGGTATTGCCATG 709
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 731 TGCTGAAAGAAGCGACGAATGTGTTTAAGTTCTATGCCAGTGGGCGTAGGTATTGCCATG 790
Query 710 GGCTGTTGGCGACCTTGGAGCTTAAGAGCAGACACGATCTGATCTCAAGGCTATTCAACT 769
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 791 GGCTTTTGGCGACTTTGGAGCTTAAGAGTAGACACGATCTGATCTCAAGGCTATTCAACT 850
Query 770 CTGTTGTGCCTTGTAAAGATGAGATCAGTTTCGAGGTTTACATGAACGATGAAGCCATGG 829
|||| |||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||
Sbjct 851 CTGTCGTGCCTTGTAAAGATGAGATTAGTTTTGAGGTGTATATGAATGATGAAGCCATGG 910
Query 830 ATCACATTGTGTTTGCGATGGCGAGGAAGAAGGCGGCTAAAACGATGCACAAGGAGCTGA 889
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 ATCACATTGTGTTTGCTATGGCGAGGAAGAAGGCGGCTAAAACGATGCACAAGGAGCTGA 970
Query 890 GGGATCTGCAGAGATTTGGAGGGATGGTGCCCAGCCCTGGCGGGAGGAAGTGGGTAACGG 949
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 971 GGGATCTGCAGAGATTTGGAGGGATGGTTCCCAGTCCTGGCGGGAGGAAGTGGGTAACGG 1030
Query 950 AGGAGTTAGCTGTGGTCTCTGAGTCTAAGGAGGTAGCTGGAGATATGATCACCGATGTTG 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 AGGAGTTAGCTGTGGTCTCTGAGTCTAAGGAGGTAGCTGGAGATATGATCACCGATGTTG 1090
Query 1010 TACTTGATCAGGTTTTTGGTGACAAGTCTTTTGAAAAGTTTGGGAAGTATTTCATCTCAA 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 TACTTGATCAGGTTTTTGGTGACAAGTCTTTTGAAAAGTTTGGGAAGTATTTCATCTCAA 1150
Query 1070 TGCATTTTTCGGATCAACATCCTGGCAAACACAGGAAGATGCTGCTTTTCAAGTTTGCCC 1129
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 TGCATTTCTCGGATCAACATCCTGGCAAACACAGGAAGATGCTGCTTTTCAAGTTTGCCT 1210
Query 1130 TACCTGATGCTAAACACATGGATGATATGGTGCGGTTGATAGCGCTAATTCCATATTATA 1189
|||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 1211 TACCTGATATTAAACACATGGATGATATGGTTCGGTTGATAGCGCTAATTCCGTATTACA 1270
Query 1190 TTGACTTAATTGGGCGCTACAAGCTCAGCTCCCAGGCAAGGAACAAAACTGACGGTGCTA 1249
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1271 TTGACTTAATTGGGCGCTACAAGCTCAGCTCTCAGGCAAGGAACAAAACTGACGGTGCTA 1330
Query 1250 GGCAAAAGGCAGCTCAGGAAGCGTACAAGGAACTTGAGAATGTAAGACAAGAGGCATTGC 1309
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1331 GGCAAAAGGCGGCTCAGGAAGCGTACAAGGAACTTGAGAATGTGAGACAAGAGGCATTGC 1390
Query 1310 AGAGAAAGAAAGCTGAAAAGAAGAAAATATTGGAGGAGGCACAGGCAAAGCTTAGCGCCG 1369
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1391 AGAGAAAGAAAGCCGAAAAGAAGAAAATATTGGAGGAGGCACAGGCAAAGCTTAGCTCCG 1450
Query 1370 AGGCTCTAAGGAAGAAAGAAGCAAAAGAACGTGCACGCCAGATGAAAAAGTCAATGCCGA 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 AGGCTCTAAGGAAGAAAGAAGCAAAAGAACGTGCACGCCAGATGAAAAAGTCAATGCCGA 1510
Query 1430 AAGTTAAGATGAGTCGAGGTCACTAGAATCAAGCATAAGG-ACACAGTCTCATGTCGTCC 1488
|||||||||||||||| ||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 1511 AAGTTAAGATGAGTCGTGGTCACTAGAATCAAGCATAAGGGACACACTGTCATGTCGTCC 1570
Query 1489 ATTGGAATAGCT 1500
||||||||||||
Sbjct 1571 ATTGGAATAGCT 1582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73995603330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5