BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945676

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39580.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Putative ...   584    4e-166
  AT3G61760.1 | Symbols: ADL1B, DL1B | DYNAMIN-like 1B | chr3:228...   185    4e-46 
  AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | ...   176    3e-43 


> AT2G39580.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Putative 
zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits 
to 219 proteins in 85 species: Archae - 0; Bacteria - 144; 
Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes 
- 18 (source: NCBI BLink). | chr2:16510425-16517073 
FORWARD LENGTH=4974
Length=4974

 Score =  584 bits (316),  Expect = 4e-166
 Identities = 351/368 (95%), Gaps = 1/368 (0%)
 Strand=Plus/Plus

Query  296   AATT-TCAGTCATCTATAGATATGGAGTCCCATAGGAGTTCACCAGAGAATGACCTTTTA  354
             |||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  2255  AATTATCAGTTATCTATAGATATGGAGTCCCATAGGAGTTCACCAGAGAATGCCCTTTTA  2314

Query  355   TCGTCTGTAGCTTTGTCAGGTCCTTTATTTCGGAGCACAATCTATCATCTGAAAGTACCA  414
             ||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct  2315  TCGTCTGTAGCGTTGTCCGGTCCTTTATTTCGGAGCACAATCTATCATTTGAAAGTCCCA  2374

Query  415   AGGTCTTCAATTACGTCTCTAGGACCAGAATATACACTTCAAAACAAGTCATATAGCCTA  474
              ||||||||||||| ||||| ||||||||||||| ||||||||||||| |||||||||||
Sbjct  2375  GGGTCTTCAATTACATCTCTGGGACCAGAATATATACTTCAAAACAAGACATATAGCCTA  2434

Query  475   TATAGTGATAAAAGACAATGTAGGAGCTTGACTGAAACTACAGTATATGAGaaaaaaaTT  534
             |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct  2435  TATAGTGATAAAAGACAATGTAGGAGCTTGACGGAAACTATAGTATATGAGAAAAAAATT  2494

Query  535   GGCTTCTACACCTTTTATTTGAAGGTGGACCCTTCTTGGCCTCTCTGCATGTACGAGTTA  594
             ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2495  GGCTTCTACACCTGTAATTTGAAGGTGGACCCTTCTTGGCCTCTCTGCATGTACGAGTTA  2554

Query  595   CGTGGAAGGTGCAATAATGATGAATGTTCTTGGCAACATTTCAAGGATTTCTCTGATGAC  654
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  2555  CGTGGAAGGTGCAATAACGATGAATGTTCTTGGCAACATTTCAAGGATTTCTCTGATGAC  2614

Query  655   AGTTTGCA  662
             ||||||||
Sbjct  2615  AGTTTGCA  2622


> AT3G61760.1 | Symbols: ADL1B, DL1B | DYNAMIN-like 1B | chr3:22860514-22864153 
REVERSE LENGTH=1926
Length=1926

 Score =  185 bits (100),  Expect = 4e-46
 Identities = 114/121 (94%), Gaps = 0/121 (0%)
 Strand=Plus/Plus

Query  5    TTAGGTTTGATTTTGTTATGGAGATTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT  64
            |||| |||||||  |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  45   TTAGTTTTGATTCCGTTATGGAGAGTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT  104

Query  65   GTACAGCTCTGGGAGATTACGGCGAGGGAAGCTCCCTCCCAACTCTGTGGGACTCATTGC  124
            |||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct  105  GTACGGCTCTGGGAGATCACGGCGAGGGAAGCTCCCTCCCAACTCTCTGGGACTCATTGC  164

Query  125  C  125
            |
Sbjct  165  C  165


 Score = 95.3 bits (51),  Expect = 8e-19
 Identities = 55/57 (96%), Gaps = 0/57 (0%)
 Strand=Plus/Plus

Query  137  TCAGGATCTTGCTACATCTGATGCCATTAAGATCTCTCGTGAAGTTGATCCAAAAGG  193
            |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  613  TCAGGATCTTGCAACATCTGATGCCATTAAGATCTCTCGTGAAGTTGATCCCAAAGG  669


> AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) 
| chr5:24980268-24983973 REVERSE LENGTH=2384
Length=2384

 Score =  176 bits (95),  Expect = 3e-43
 Identities = 101/104 (97%), Gaps = 0/104 (0%)
 Strand=Plus/Plus

Query  191   AGGTTACTCTTGCTGGATTTAGGAATGGCAAGTTTTCTACATTGGTGGCTACAAATGTTG  250
             ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct  1251  AGGTTACTCTTGCTGGATTTAGGAATGGCAAGTTTGCAACATTGGTGGCTACAAATGTTG  1310

Query  251   CTGCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATTCAG  294
             |||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1311  CTGCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATCCAG  1354



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36871863898


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5