BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945678
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24250.1 | Symbols: MLO13, ATMLO13 | Seven transmembrane MLO... 2370 0.0
> AT4G24250.1 | Symbols: MLO13, ATMLO13 | Seven transmembrane MLO
family protein | chr4:12574812-12577583 REVERSE LENGTH=1699
Length=1699
Score = 2370 bits (1283), Expect = 0.0
Identities = 1393/1447 (96%), Gaps = 3/1447 (0%)
Strand=Plus/Plus
Query 1 TCTCCATCTTGGAGGTGCAGAAATGGCAGAAGCAAGGTCTGGTTCTCTTGAGTATACACC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 45 TCTCCATCTTGGAGGTGCAGAAATGGCAGAAGCAAGGTCTGGTTCTCTTGAGTATACACC 104
Query 61 CACATGGGTCGTTGCGTTTATCTGTTTCATCATTGTTCTCTTATCTCTTCTCGCTGAACG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 CACATGGGTCGTTGCGTTTATCTGTTTCATCATTGTTCTCTTATCTCTTCTCGCTGAACG 164
Query 121 TGGTCTTCATCATCTTGGAAAGTGTCTCAAGCGTAGGCAACAAGATGCCTTATTCGAAGC 180
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 165 TGGTCTTCATCATCTTGGAAAGTGTCTGAAGCGTAGGCAACAAGATGCCTTGTTCGAAGC 224
Query 181 CTTGCAGAAACTTAAAGAAGAACTGATGCTTCTTGGATTTATCTCCCTGATGTTAACGGT 240
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 225 CTTGCAGAAACTCAAAGAAGAATTGATGCTTCTTGGATTTATCTCCCTGATGTTAACGGT 284
Query 241 ATCTCAGGCCGCAATTCGGCATATCTGTGTACCACCAGCTCTTGTAAACAACATGTTTCC 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 285 ATCTCAGGCCGCAATTCGGCATATCTGTGTCCCACCAGCTCTTGTAAACAACATGTTTCC 344
Query 301 CCGTAAGAAGCCATTGGAGAAGCATGATGCTCCTAAATCATCTCATTCGGTTATCATCAA 360
| ||||||||||||||||| ||||| |||| |||||||||||||||||| |||||| |||
Sbjct 345 CTGTAAGAAGCCATTGGAGGAGCATCATGCGCCTAAATCATCTCATTCGATTATCAACAA 404
Query 361 TGCACGACATCTCCTTTCAACAGGAGAAAGTCCAGACCATTGTGCTGCCAAGGGCCAGGT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 405 TGCACGACATCTCCTTTCAACAGGAGAAAGTCCAGACCATTGTGCTGCCAAGGGGCAGGT 464
Query 421 TCCGTTAGTATCCGTGGAAGCTTTGCATCAACTCCATATTTTCATCTTTGTGCTAGCGGT 480
||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 465 TCCATTAGTATCTGTGGAAGCGTTGCATCAACTCCATATCTTCATCTTTGTGCTAGCGGT 524
Query 481 TTTTCACGTCATCTTCTGCGCATCAACAATGGTTCTTGGAGGAGCTAGGATACAACAATG 540
||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 525 TTTTCACGTCATCTTCTGCGCCTCAACCATGGTTCTTGGAGGAGCAAGAATACAACAATG 584
Query 541 GAAGCATTGGGAGGATTGGTTCAAGAAACGTCCTTCTCAAAAGGGCACTACAAGGCGTGG 600
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GAAACATTGGGAGGATTGGTTCAAGAAACGTCCTTCTCAAAAGGGCACTACAAGGCGTGG 644
Query 601 TCATGCTCATGCTCATGCTCACGAGTTATTCAGTGCAAATTACGAGTTCTTCGAAATGCA 660
|||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 645 TCAT-C--ATGCTCATGCTCACGAGTTATTCAGTGCAAATCACGAGTTCTTCGAGATGCA 701
Query 661 TGCTGGAGGATTTTGGAGAAGATCTGTTGTCATCAGTTGGCTGAGATCATTCTTCAAGCA 720
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 702 TGCTGGAGGATTTTGGAGAAGATCTGTTGTCATCAGCTGGGTGAGATCATTCTTCAAGCA 761
Query 721 GTTTTATGGTTCTGTCACCAAATCAGAATATATAGCTCTGCGACAAGCGTTCATCATGAG 780
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 762 GTTTTATGGTTCTGTCACCAAATCAGAATACATAGCTCTGCGACAAGCATTCATCATGAG 821
Query 781 TCATTGCCGCACAAACCCATCATTTGATTTTCACAAGTACATGCTAAGAACACTGGAAAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 TCATTGCCGCACAAACCCATCATTTGATTTTCACAAGTACATGCTAAGAACACTGGAAAT 881
Query 841 AGATTTCAAGAAAGTTGTGAGCATAAGTTGGTATCTCTGGCTCTTTGTGGTCGTCTTTTT 900
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 882 AGATTTCAAGAAAGTTGTGAGCATAAGTTGGTATCTATGGCTCTTTGTCGTCGTCTTTTT 941
Query 901 GCTGCTGAATGTTGGAGGATGGAACACCTACTTCTGGTTGTCTTTCTTGCCTCTGATTCT 960
|||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||| |
Sbjct 942 GCTGCTCAATGTTGGAGGATGGAACACTTACTTCTGGTTATCTTTCTTGCCTTTGATTTT 1001
Query 961 GTTACTAATGGTGGGTGCCAAATTGGAATATATAATAAGTAGCTTAGCTCTGGATGTTTC 1020
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1002 GTTACTAATGGTGGGTGCCAAGTTGGAATATATAATAAGTAGCTTAGCTTTGGATGTTTC 1061
Query 1021 CGAGAAGCGAAACCGCGCGGAAGAAGCAGTGATCACACCTTCTGATGAACTCTTTTGGTT 1080
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CGAGAAGCGAAGCCGCGCGGAAGAAGCAGTGATCACACCTTCTGATGAACTCTTTTGGTT 1121
Query 1081 CCATAGGCCAGGCATTGTTCTCCAACTTATCCACTTCATTCTCTTTCAGAATTCATTTGA 1140
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1122 CCATAGGCCAGGCATTGTTCTCCAACTCATCCATTTCATTCTCTTTCAGAATTCATTTGA 1181
Query 1141 GATTGCTTTCTTCTTCTGGATTTTGTTCACGTACGGAATACATTCATGTATCATGGAGAA 1200
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1182 GATTGCTTTCTTCTTCTGGATTTTGTTCACATACGGAATACATTCATGTATCATGGAGAA 1241
Query 1201 ACTAGGCTTCCTCATCCCAAGACTCGTCATGGGAGTGTTAGTCCAAGTGCTTTGCAGTTA 1260
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 ACTAGGCTACCTTATCCCAAGACTCGTCATGGGAGTGTTAGTCCAAGTGCTTTGCAGTTA 1301
Query 1261 CAGCACATTACCACTGTATGCCCTTGTAACACAAATGGGTAGCAAATTCAAGAAAGGGAT 1320
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1302 CAGCACATTACCACTATATGCCCTTGTTACACAAATGGGTAGCAAATTCAAGAAAGGGAT 1361
Query 1321 ATTCGACAATGTAGTACAGTCCACACTTGAAGGATGGTTAGAAGATACGAGGAACAAAGG 1380
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1362 ATTCGACAATGTAGTACAGTCCACACTGGAAGGATGGTTAGAAGATACGAGGAACAGAGG 1421
Query 1381 AGAATCCACAAGCGAGGCTCATAGGATAGAGATGCAATCTACGACTCCTGAATCTTATAA 1440
|||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1422 CGAATCCACGAGCGAGGCTCATAGGATAGAGATGCAACCTACAACTCCTGAATCTTATAA 1481
Query 1441 TGTTCAA 1447
||| |||
Sbjct 1482 TGTCCAA 1488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73543798425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5