BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945679
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24240.1 | Symbols: WRKY7, ATWRKY7 | WRKY DNA-binding protei... 1568 0.0
> AT4G24240.1 | Symbols: WRKY7, ATWRKY7 | WRKY DNA-binding protein
7 | chr4:12571766-12573725 FORWARD LENGTH=1505
Length=1505
Score = 1568 bits (849), Expect = 0.0
Identities = 1009/1085 (93%), Gaps = 16/1085 (1%)
Strand=Plus/Plus
Query 19 TGAGATGACGGTTGAGCTGATGATGAGCAGCT--A-CGGCGGAGGAGGAGGAGGAGACGG 75
||||||||| |||||||||||||||||||||| | |||||| ||||||||||| || ||
Sbjct 161 TGAGATGACTGTTGAGCTGATGATGAGCAGCTACAGCGGCGGCGGAGGAGGAGGTGATGG 220
Query 76 TTTTCCTGCAATCGCCGCGGCGGCGAAACTGGAAGACACAGCTTTGAGAGAAGCTGCGTC 135
|||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||
Sbjct 221 TTTTCCTGCAATCGCCGCGGCGGCGAAAATGGAAGATACCGCTTTGAGAGAAGCTGCTTC 280
Query 136 TGCAGGGATTCACGGTGTGGAGGAGTTTCTCAAACTCATCGGTCAAAGT---CAACCAAC 192
|||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 281 TGCAGGGATTCACGGTGTGGAGGAGTTTCTTAAACTGATCGGTCAAAGTCAACAACCAAC 340
Query 193 GGAGAATAATCAGACGGAGATAACGGCGGTGACTGACGTCGCCGTAAACAACTTCAAGAA 252
|||||| | ||||||||||||||| |||||||||||||||||||| |||| |||||||||
Sbjct 341 GGAGAAGAGTCAGACGGAGATAACCGCGGTGACTGACGTCGCCGTTAACAGCTTCAAGAA 400
Query 253 GGTCATTTCTTTACTCGGTAGATCTAGAACTGGACACGCTAGATTCAGACGAGCCCCCAC 312
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 401 GGTCATTTCTCTACTCGGTAGATCTAGAACCGGACACGCTAGATTCAGACGAGCTCCCGC 460
Query 313 AACGACGCAAACGCCGTTTAAACAAACGATGGTGG-T--GGAGGAGGT---GGCGGAGGA 366
| ||||||||||||||||| |||||| ||||| | ||||||||| || ||||||
Sbjct 461 GTCAACGCAAACGCCGTTTAAGCAAACGCCGGTGGTTGAGGAGGAGGTGGAGGTGGAGGA 520
Query 367 GAAGAAGCCAGAAACAACCTCCGTGCTAACAAAACAGAAAACAGAGCAATATAATC-ACG 425
||||||||||||||||| ||||||| |||||||||||||||||||||||||| | | |
Sbjct 521 GAAGAAGCCAGAAACAAGCTCCGTGTTAACAAAACAGAAAACAGAGCAATATCA-CGGTG 579
Query 426 GTGGATCTGCGTTTAGAGTTTATTGTCCAACTCCAATTCATCGTCGTCCTCCTCTATCac 485
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 580 GTGGATCTGCGTTTAGAGTTTATTGTCCAACACCAATTCATCGTCGTCCTCCTCTATCAC 639
Query 486 acaacaacaacaacaaTCAGAATCAGACAAAGAACGGTTCGTCTTCTTCGTCTCCTCCGA 545
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 640 ACAATAACAACAACAATCAGAATCAAACAAAGAACGGTTCGTCTTCTTCATCTCCTCCGA 699
Query 546 TACT-GACAAACGGAGCACCGTCAACGATAAACTTCGCGCCGTCACCACCAGTCTCAGCA 604
| || | |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 700 TGCTCG-CAAACGGAGCACCGTCAACGATAAACTTTGCGCCGTCACCACCAGTCTCAGCG 758
Query 605 ACGAACTCATTCATGTCTTCTCATAGATGTGACACCGACAGTACTCAAATGTCATCAGGA 664
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 759 ACGAACTCATTCATGTCTTCTCATAGATGTGACACCGATAGTACTCACATGTCATCAGGA 818
Query 665 TTCGAGTTCACTAACCCATCTCAGGTCTCTGGTTCGAGAGGTAAACCTCCTCTATCATCA 724
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 819 TTCGAGTTCACTAACCCATCTCAGCTCTCTGGTTCGAGAGGTAAACCTCCTTTATCATCA 878
Query 725 GCTTCATTAAAGAGAAGATGTAACTCCTCTCCCTCTAGTCGTTGCCATTGCTCCAAGAAA 784
||||| || |||||||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 879 GCTTCGTTGAAGAGAAGATGTAATTCATCTCCCTCAAGCCGTTGCCATTGCTCCAAGAAA 938
Query 785 AGGAAATCAAGAGTGAAGAGAGTGATTAGAGTTCCAGCAGTAAGTAGCAAAATGGCTGAT 844
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 AGGAAATCAAGAGTAAAAAGAGTGATTAGAGTTCCAGCAGTAAGTAGCAAAATGGCTGAT 998
Query 845 ATACCATCAGACGAGTTTTCGTGGAGAAAATATGGTCAAAAACCAATTAAAGGCTCTCCC 904
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 999 ATACCATCAGATGAGTTTTCATGGAGAAAATATGGTCAAAAACCAATCAAAGGCTCTCCT 1058
Query 905 CATCCTCGGGGATATTACAAGTGCAGCAGTGTAAGAGGTTGTCCGGCGCGTAAGCATGTG 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 CATCCTCGGGGATATTACAAGTGCAGCAGTGTAAGAGGTTGTCCGGCGCGTAAGCATGTG 1118
Query 965 GAGCGTGCACTGGACGATGCGATGATGCTTATCGTGACGTACGAAGGAGACCACAGCCAT 1024
||||||||||| || |||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1119 GAGCGTGCACTAGATGATGCGATGATGCTAATCGTGACGTACGAAGGAGACCACAACCAT 1178
Query 1025 GCTTTGGTTCTCGAGACGACGACGACGAATCATGACAAAACTCTTTAATTTCTCGAGTTT 1084
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1179 GCTTTGGTTCTCGAGACGACGACGATGAATCATGACAAAACTCTTTAGTTTCTCGAGTTT 1238
Query 1085 GAGGG 1089
|||||
Sbjct 1239 GAGGG 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53614182060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5