BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945681
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24220.1 | Symbols: VEP1, AWI31 | NAD(P)-binding Rossmann-fo... 1882 0.0
> AT4G24220.1 | Symbols: VEP1, AWI31 | NAD(P)-binding Rossmann-fold
superfamily protein | chr4:12564945-12566755 FORWARD LENGTH=1722
Length=1722
Score = 1882 bits (1019), Expect = 0.0
Identities = 1134/1191 (95%), Gaps = 1/1191 (0%)
Strand=Plus/Plus
Query 21 AAAATGAGTTGGTGGTGGGCTGGCGCCATCGGAGCTGCAAAGAAGAAACTAGATGAAGAT 80
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 272 AAAATGAGTTGGTGGTGGGCTGGCGCCATCGGAGCTGCCAAGAAGAAACTCGACGAAGAT 331
Query 81 GAGCCGTCGCAAAGCTACGAAAGCGTCGCTCTCATCATCGGCGTTACTGGAATCGTCGGA 140
|| || || ||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 332 GAACCATCACAAAGCTTCGAGAGCGTCGCTCTCATCATCGGCGTTACTGGAATCGTCGGA 391
Query 141 AACAGCTTGGCGGAGATTCTCCCTCTTTCCGATACTCCCGGCGGTCCCTGGAAAGTTTAC 200
|||||||||||||||||||||||||||||||| || ||||| ||||| |||||||| |||
Sbjct 392 AACAGCTTGGCGGAGATTCTCCCTCTTTCCGACACACCCGGTGGTCCATGGAAAGTCTAC 451
Query 201 GGCGTTGCTCGTCGTCCTCGACCCACCTGGAACGCCGATCATCCGATCGATTACATCCAG 260
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 452 GGCGTCGCTCGTCGTCCTCGTCCTACCTGGAACGCCGATCATCCGATCGATTACATCCAG 511
Query 261 TGCGATGTCTCCGACGCCGAAGACGCAAGATCCAAGCTTTCCCCTTTAACCGATGTCACT 320
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 512 TGCGATGTCTCCGACGCCGAAGACACAAGATCCAAGCTTTCCCCTTTAACCGATGTCACA 571
Query 321 CATGTCTTCTACGTGACCTGGACCAACCGTGAATCGGAGAGTGAAAACTGCGAGGCTAAT 380
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| || || |||
Sbjct 572 CATGTCTTCTACGTCACCTGGACCAATCGTGAATCGGAAAGTGAAAACTGTGAAGCAAAT 631
Query 381 GGCTCAATGCTCCGTAACGTTCTCCGAGCGATTGTCCCAAACGCGCCAAATCTCCGGCAC 440
||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||
Sbjct 632 GGCTCAATGCTCCGTAACGTTCTCCAAGCGATTATCCCATACGCGCCAAATCTCCGACAT 691
Query 441 GTTTGTCTCCAGACGGGGACAAAGCATTACGTTGGCCCTTTCAGCAACCTTGACGGACCT 500
|||||||||||||| ||||||||||| ||| |||||||||||| |||| |||||||||||
Sbjct 692 GTTTGTCTCCAGACAGGGACAAAGCACTACCTTGGCCCTTTCACCAACGTTGACGGACCT 751
Query 501 CGTCATGATCCACCGTTCACTGAGGATATGCCGAGATTGCAGATCCAGAATTTCTATTAT 560
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 CGTCACGATCCACCGTTCACTGAGGATATGCCGAGATTGCAGATCCAGAATTTCTATTAT 811
Query 561 ACTCAAGAGGATGTTCTGTTTGATGAGATCAAGAAGATAGAAACCGTGACGTGGACTATC 620
|| ||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 812 ACCCAAGAGGATATTCTGTTTGAAGAGATCAAGAAGATAGAAACCGTGACGTGGTCTATC 871
Query 621 CACAGACCAAACACGATCTTTGGGTTCTCTCCTTATAGTCTGATGAACATTGTTGGGACT 680
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 872 CACAGACCAAACATGATCTTTGGGTTCTCTCCTTATAGTTTGATGAACATTGTTGGGACT 931
Query 681 CTTTGTGTCTATGCAGCGATCTGTAAGCATGAAGGGTCTCCGTTGTTGTTTCCTGGGAGC 740
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 932 CTCTGTGTCTATGCAGCGATATGTAAGCATGAAGGGTCTCCGTTGTTGTTTCCTGGGAGC 991
Query 741 AAGAAAGCTTGGGAAGGGTTCACGACGGCTTCTGACGCGGACTTGATTGCGGAGCAGCAG 800
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 992 AAGAAAGCTTGGGAAGGGTTCATGACGGCTTCTGACGCGGATTTGATTGCGGAGCAGCAG 1051
Query 801 ATTTGGGCTGCGGTTGATCCGTATGCGAAGAACGAGGCGTTTAACTGCAACAATGCTGAT 860
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 ATTTGGGCGGCGGTTGATCCGTATGCGAAGAACGAGGCGTTTAACTGCAACAATGCTGAT 1111
Query 861 ATCTTCAAGTGGAAGCATCTGTGGAAGATTCTAGCTGAGCAATTTGGGATTGAGGAGTAT 920
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1112 ATCTTCAAGTGGAAGCATCTGTGGAAGATTCTAGCTGAGCAGTTTGGGATTGAGGAGTAT 1171
Query 921 GGATTTGAGGAAGGGAAGAATTTGGGGTTGGTGGAGATGATGAAAGGGAAAGAGAGAGTG 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 GGATTTGAGGAAGGGAAGAATTTGGGGTTGGTGGAGATGATGAAAGGGAAAGAGAGAGTG 1231
Query 981 TGGGAGGAGATGGTTAAAGAGAATCAGTTGCAGGAGAAGAAGCTTGAAGAAGTTGGTGTG 1040
||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 1232 TGGGAGGAGATGGTTAAGGAGAATCAATTGCAAGAGAAGAAGCTTGAGGAAGTTGGTGTG 1291
Query 1041 TGGTGGTTTGCTGATGTTGTACTTGGAGTTGATGGACTGATTGATAGTATGAACAAGAGT 1100
|||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1292 TGGTGGTTTGCTGATGTTATACTTGGAGTTGAAGGAATGATTGATAGTATGAACAAGAGT 1351
Query 1101 AAGGAACATGGCTTCCTTGGTTTCAGGAACTCCAACAACTCTTTTATCTCTTGGATTGAC 1160
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 AAGGAATATGGCTTCCTTGGTTTCAGGAACTCCAACAACTCTTTTATCTCTTGGATTGAC 1411
Query 1161 AAGTACAAGGCGTTCAAGATCGTGCCTTGATTCCAAA-CATACTTGGATGT 1210
||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1412 AAGTACAAGGCGTTCAAGATCGTACCTTGATTCCAAAACATACTTGGATGT 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59437445280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5