BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945689
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24160.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2067 0.0
> AT4G24160.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:12539786-12542489 FORWARD LENGTH=1621
Length=1621
Score = 2067 bits (1119), Expect = 0.0
Identities = 1243/1303 (95%), Gaps = 7/1303 (1%)
Strand=Plus/Plus
Query 1 TTTGA-TTT-TG-TTCGGTGATTGAATGAACTCGAGTCGTTTTGCGTCAAGACTAAGAAT 57
||||| ||| || ||| ||||||| ||||||| ||| |||||||| || ||| |||||||
Sbjct 61 TTTGATTTTGTGATTCCGTGATTGTATGAACTTGAGCCGTTTTGCTTCGAGATTAAGAAT 120
Query 58 GGCTGAAGAAATATC-AA-A-GAAGGTTGGATCTTCTTCTACTGCTTCGGTGGCTGATTC 114
||| |||||||| || || | |||||| ||||||||||||||||||||||||||||||||
Sbjct 121 GGCGGAAGAAATCTCAAAGACGAAGGTGGGATCTTCTTCTACTGCTTCGGTGGCTGATTC 180
Query 115 ATCTGCTGCTACGTCGGCTGCAACGAATGCAGCGAAATCAAGATGGAAAATTTTGTGGCC 174
|||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 181 ATCTGCTGCTGCGTCGGCTGCAACGAATGCGGCCAAATCAAGATGGAAAATTTTGTGGCC 240
Query 175 TAATTCGCTCCGGTGGATACCTACGTCCACCGATTATATCATCGCCGCTGAGAAACGTCT 234
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 241 TAATTCGCTCCGGTGGATTCCTACGTCCACCGATTACATCATCGCCGCCGAGAAACGTCT 300
Query 235 TCTCTCCATCCTCAAGACGCCTTATGTACAAGAGCAAGTCAATATTGGTTCAGGACCACC 294
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 TCTCTCCATCCTCAAGACGCCTTATGTACAAGAGCAAGTCAGTATTGGTTCAGGACCACC 360
Query 295 AGGTTCCAAAATCAGGTGGTTTAGGTCTACGAGCAATGAGTCACGTTACATCAATACTGT 354
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 AGGTTCTAAAATCAGGTGGTTTAGGTCTACGAGCAATGAGTCACGTTACATCAACACTGT 420
Query 355 TACCTTTGATGCCAAGGAGGGTGCTCCTACACTCGTGATGGTTCATGGATATGCTGCTTC 414
||| ||||||||||||||||| |||||||||||||| ||||||||||| |||| ||||||
Sbjct 421 TACATTTGATGCCAAGGAGGGAGCTCCTACACTCGTCATGGTTCATGGTTATGGTGCTTC 480
Query 415 TCAAGGTTTTTTCTTCCGTAATTTCGATGCTCTTGCCAGTCGGTTTAGGGTGATTGCTAT 474
|||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 481 TCAAGGGTTTTTCTTCCGTAATTTTGATGCTCTTGCCAGTCGATTTAGAGTGATCGCTAT 540
Query 475 TGATCAACTTGGGTGGGGTGGATCAAGTAGGCCTGATTTTACATGTAGAAGCACAGAAGA 534
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGATCAACTTGGGTGGGGTGGTTCAAGTAGGCCTGATTTTACATGTAGAAGCACAGAAGA 600
Query 535 AACTGAGGCATGGTTTATCGACTCCTTTGAGGAATGGCGTAAAACCCAGAATCTCAGTAA 594
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 AACTGAGGCATGGTTTATCGACTCCTTTGAGGAATGGCGTAAAGCCCAGAATCTCAGTAA 660
Query 595 CTTTATTCTATTAGGACATTCTTTTGGAGGCTATGTTGCTGCTAAATACGCGCTTAAGCA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTTATTCTATTAGGACATTCTTTTGGAGGCTATGTTGCTGCTAAATACGCGCTTAAGCA 720
Query 655 TCCTGAACATGTTCAACACTTAATTCTGGTGGGATCTGCTGGGTTCTCAGCAGAAGGAGA 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 TCCTGAACATGTTCAACACTTAATTCTGGTGGGATCTGCTGGGTTCTCAGCAGAAGCAGA 780
Query 715 TGCCAAATCGGAATGGCTCACTAAATTTAGAGCAACATGGAAAGGTGCAGTCCTAAACCA 774
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 781 TGCCAAATCAGAATGGCTCACTAAATTTAGAGCAACATGGAAAGGTGCAGTCCTAAATCA 840
Query 775 TTTATGGGAGTCGAATTTCACTCCTCAGAAGCTGATTAGAGGATTAGGTCCTTGGGGTCC 834
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 TTTATGGGAGTCAAATTTCACTCCTCAGAAGCTGGTTAGAGGATTAGGTCCTTGGGGTCC 900
Query 835 AGGCCTTGTAAATCGGTATACAACTGCAAGATTTGGTGCACATTCAGAGGGAACTGTGCT 894
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 901 AGGTCTTGTAAATCGGTATACAACTGCAAGATTTGGTGCACATTCGGAGGGAACTGGGCT 960
Query 895 AACAGAAGAGGAAGCCAAATTGCTAACCGATTATGTATACCATACTTTGGCTGCAAAGGC 954
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 961 AACAGAAGAGGAAGCCAAATTGCTAACCGATTATGTGTACCATACTTTGGCTGCAAAGGC 1020
Query 955 TAGTGGAGAATTGTGCTTGAAATACATCTTCTCCTTTGGAGCATTTGCTCGGAAGCCCCT 1014
||||||||| || |||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1021 TAGTGGAGAGTTATGCTTGAAATACATCTTCTCATTTGGAGCATTTGCTAGGAAGCCCCT 1080
Query 1015 CTTACAAAGTGCATCAGAGTGGAAAGTGCCAACAACGTTTATCTATGGAATGAATGATTG 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTTACAAAGTGCATCAGAGTGGAAAGTGCCAACAACGTTTATCTATGGAATGAATGATTG 1140
Query 1075 GATGAACTATCAAGGTGCGGTGGAAGCAAGGAAATCCATGAAGGTCCCTTGCGAAATCAT 1134
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1141 GATGAACTATCAAGGTGCGGTGGAAGCGAGGAAATCCATGAAGGTCCCTTGCGAAATCAT 1200
Query 1135 TCGGGTTCCACAGGGTGGTCATTTTGTGTTCATAGACAACCCAAGTGGTTTTCATTCTGC 1194
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1201 TCGGGTTCCACAGGGTGGTCATTTTGTGTTCATAGACAACCCAATTGGTTTTCATTCTGC 1260
Query 1195 AGTGCTTTATGCTTGCCGTAAGTTTATATCCCAAGACTCGTCTCATGATCAACAACTCCC 1254
|||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1261 AGTGCTTTATGCTTGCCGCAAGTTTATATCTCAAGACTCCTCTCATGATCAACAACTCCT 1320
Query 1255 AGATGGTTTACGTTTGGTTTAGTTATAGTATCTTGTTC-TTTT 1296
||||||| |||| |||||||||| |||||||||||||| ||||
Sbjct 1321 AGATGGTCTACGATTGGTTTAGTCATAGTATCTTGTTCCTTTT 1363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5