BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945695
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24110.1 | Symbols: | unknown protein; Has 76 Blast hits to... 1182 0.0
> AT4G24110.1 | Symbols: | unknown protein; Has 76 Blast hits
to 76 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa
- 1; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:12519932-12520813 REVERSE
LENGTH=882
Length=882
Score = 1182 bits (640), Expect = 0.0
Identities = 743/791 (94%), Gaps = 13/791 (2%)
Strand=Plus/Plus
Query 11 aaaaGAGAGAAATGTGTAGATCGCCGGATTTCGAGCGTTATGTTGAGAAAGAGAGCTTAA 70
|||| | |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 41 AAAATACAGAAATGTGTAGGTCGCCCGATTTCGAGCGTTATGTCGAGAAAGAGAGCTTAA 100
Query 71 AGGTTAAAGCTTTCTTCGTCAGGTTCACTGGTTTACCCACACGAGAATTCTTACCGGATT 130
|||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||
Sbjct 101 AGGTTAAAGCTTTCTTCGTCCGGTTCACAGGTTTACCCACCCGAGGATTCTTACCGGATT 160
Query 131 CTCTCACTCTTCTCTACCCACCACGAATCAACGAAGCGGCTTTCGAGCTCGATGGGTCCA 190
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 161 CTCTCACTCTTCTCTACCCACCACGAATCAACGAAGCTGCTTTCGAGCTTGATGGGTCCA 220
Query 191 AGATCCGACCCGATTCTCCAGCGTTCGTGACGC-TCTACAGAGTCGTGAAAGGAGGAGAC 249
|||||||||||||||| ||||| |||||||||| || |||||||||||||||||||||||
Sbjct 221 AGATCCGACCCGATTCCCCAGCTTTCGTGACGCTTC-ACAGAGTCGTGAAAGGAGGAGAC 279
Query 250 GTGATTTACGGGTCTAGAGAACGGGTTCGGGTCTGGGAAGGGATCCGTTTCGAGGTGTAC 309
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 280 GTGATTTACGGGTCAAGAGAACGTGTTCGGGTCTGGGAAGGGATCCGCTTCGAGGTGTAC 339
Query 310 ATGAGTGAGGAGAGGGTGATAAAAGGTATTTTCAGAAAAGAAGAAGTG-GACAAGTGGAA 368
||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct 340 ATGAGTGAGGAGAGGGTGATAAAAGGTATTTTCAGAAAAGACGAAG-GAGACAAGTGGAA 398
Query 369 ACTTGAGTGCGAGTGTGAGATGGAGGAGGAAGGTGCGGCGGAGGTTGTTGTAGCGGCGGA 428
|||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct 399 ACTTGAGTGCGAGTGTGAGATGGAAGAGGAAGGAGCGGCGGAAGTTGTTGTTGCGGCGGA 458
Query 429 GGGACACGTGGCGACGGCGACGATGGCGAGGAAACATAGACGAAggaggaagcagaggat 488
|||||||||||| || |||||||||||||||||||||||| ||||||| ||||| | |||
Sbjct 459 GGGACACGTGGCAACAGCGACGATGGCGAGGAAACATAGAAGAAGGAGAAAGCAAAAGAT 518
Query 489 tgggtttgagtgtttggaggagataccggaggagagagaggaagggagagaATCTGACGG 548
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 519 TGGGTTTGAGTGTTTGGAGGAGATACCGGAGGAGAGAGAGGAAGGGAGGGATTCTGACGG 578
Query 549 CGGCGTGTGTTTTTGCACGTGTAGCGGCGGCGGTGAATCTGACGACGGAGAGGGAGAGTG 608
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 579 CGGCGTGTGTTTTTGCACGTGTA---GCGGC---GAATCTGACGACGGAGAGGGAGAGTG 632
Query 609 GGAGGAGGTGGAATGGACGGCTGAGATGGAGTCTGAGACAGAGGGAATGGGATGGGCCGT 668
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 633 GGAAGAGGTGGAATGGACGGCTGAGATGGAGTCTGAGACAGAAGGAATGGGATGGGCCGT 692
Query 669 TGATTTGGGGATTTGGGTTATGTGTTTGGGTGTGGGCTATTTGGTGTCTAAAGCCTCTAC 728
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 693 AGATTTGGGGATTTGGGTTATGTGTTTGGGTGTGGGCTATTTAGTGTCTAAAGCCTCTAC 752
Query 729 CAAAACCTTGACAAGTGGGAGAAGAAGAAGGACAAGAA---CTTTCTTCTAATTTCTTGT 785
|||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||
Sbjct 753 CAAAACCTTGACAAGTGGGAGAAGAAGAAGGACAAGAAGAACCTTCTTCTAATTCCTTGT 812
Query 786 GTAATCAATCA 796
|||||||||||
Sbjct 813 GTAATCAATCA 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38881229778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5