BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945698
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24080.1 | Symbols: ALL1 | aldolase like | chr4:12511358-125... 802 0.0
> AT4G24080.1 | Symbols: ALL1 | aldolase like | chr4:12511358-12512290
FORWARD LENGTH=722
Length=722
Score = 802 bits (434), Expect = 0.0
Identities = 506/541 (94%), Gaps = 4/541 (1%)
Strand=Plus/Plus
Query 222 CTAAGAAAGCGTTAGATCTCGGACCCGACGGCATTATGTTCCCGATGGTCGAAACCGGAA 281
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 184 CTAAGAAAGCGTTAGATCTCGGACCCGACGGCATTATGTTCCCAATGGTCGAAACCGGAA 243
Query 282 GATCTGCCTCCGAAGCTGTCTCGTTTTGTCGGTATCGTCCCGACGGTGTTCGCGGCTGTG 341
||||||| ||||| || ||||||||||| | ||||||||| |||||||||||||||||||
Sbjct 244 GATCTGCATCCGAGGCGGTCTCGTTTTGCCTGTATCGTCCTGACGGTGTTCGCGGCTGTG 303
Query 342 CTTACTCCGTTGTGAGAGACTCCAACTTTGGATTTAACGAAGGGTATTTGGGTAATTACG 401
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 304 CTTACTCCGTTGTGAGAGACTCCAGCTTCGGATTTAACGAAGGGTATTTGGGTAATTACG 363
Query 402 CTGATAAGCTCTTCATCATGTGTCAGATAGAATCAGACGAAGGTGT-AAAGAATGTGAAG 460
|||||||||||||||| ||||| ||||| |||||||| |||||| | ||| |||||||||
Sbjct 364 CTGATAAGCTCTTCATTATGTGCCAGATTGAATCAGAGGAAGGTATGAAA-AATGTGAAG 422
Query 461 GAGATCGTAGCCGTTGATGGGATGGATTGTGTGATGATGGGGCCGAGAGATCTGAGTGCG 520
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GAGATCATAGCCGTTGATGGGATGGATTGTGTGATGATGGGGCCGAGAGATCTGAGTGCG 482
Query 521 AGTTTGGGGCTACTTAACGATCCAGGAAACCCGAAGTTGAAGTCCGTCATGAGGGTAGCG 580
||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 483 AGTTTGGGGTTACTTAACGATCCAGGAAACCCGAAGGTGAAGTCGGTCATGAGGGTGGCT 542
Query 581 GAGACGGCGGTTTTAGCATCTGATCCGGCGAATGGCGGAGCTTACTTGGCAGGGATGGCC 640
||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 543 GAGACGGCGGTGTTGGCCTCTGATCCGGCGAATGGTGGAGCTTACTTGGCAGGGATGGCC 602
Query 641 A-GAGCTCAGGACAAAACCGGTGATCTCAAGGCACGCGGGTATCACGTGGTGCTTGGGTC 699
| | |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 603 ACG-GCTCAGGACAAAACCGGTGATCTCAAGGCACGTGGGTATCACGTGGTGCTCGGGTC 661
Query 700 AACTGATGTATCTTTGTACAAGAAGGCTGTGGTTGATGAGGTCAACGCTTTTAAAGCTTA 759
||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 662 AACCGATGTGTCGCTGTACAAGAAGGCTGTGGTTGATGAGGTCAACGCTTTTAAAGCGTA 721
Query 760 G 760
|
Sbjct 722 G 722
Score = 176 bits (95), Expect = 3e-43
Identities = 155/183 (85%), Gaps = 7/183 (4%)
Strand=Plus/Plus
Query 2 CCTCCTCCA---CTCTCAGT-AGCAATGGCTTCCAAAAAATCACTGAAATCACGTCTCCA 57
||||||||| |||||||| | ||||||| |||||||||| |||||||||||||||||
Sbjct 3 CCTCCTCCACTTCTCTCAGTCA-CAATGGCGACCAAAAAATCTCTGAAATCACGTCTCCA 61
Query 58 AGATGGAGAAAAACTGCTTGGTCACTTTCTTCTCTC-TTTCTCACCGGAGCTCGCGGAGA 116
|||||||||||| || || || |||||||||||||| ||| || |||||||| || ||||
Sbjct 62 AGATGGAGAAAAGCTTCTCGGCCACTTTCTTCTCTCCTTT-TCTCCGGAGCTTGCAGAGA 120
Query 117 TCGCTGCCCGAGCTGGATTCGACTTCATAATCGTCGATATGGAGCATGGCGCCGGCGGGA 176
||||||| |||||||||| |||||||| ||||| | | ||||| || ||||||||||
Sbjct 121 TCGCTGCAAGAGCTGGATTTGACTTCATTGTCGTCTACCTTGAGCACGGTGCCGGCGGGA 180
Query 177 TTC 179
|||
Sbjct 181 TTC 183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5