BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945701 Length=1927 Score E Sequences producing significant alignments: (Bits) Value AT4G24040.1 | Symbols: ATTRE1, TRE1 | trehalase 1 | chr4:124881... 2789 0.0 > AT4G24040.1 | Symbols: ATTRE1, TRE1 | trehalase 1 | chr4:12488183-12491235 FORWARD LENGTH=2115 Length=2115 Score = 2789 bits (1510), Expect = 0.0 Identities = 1799/1937 (93%), Gaps = 25/1937 (1%) Strand=Plus/Plus Query 1 TCA-AATTCAAACATTTGGCAATGAAATCACACAAACATAACAACCCTAATCTACTAATC 59 ||| |||||||||||||||||||||||||| |||||| ||| ||||||||| |||| ||| Sbjct 39 TCAGAATTCAAACATTTGGCAATGAAATCATACAAACTTAATAACCCTAATTTACTCATC 98 Query 60 TCCACGCATACAC---ATAAACTCTTCTTATCCTCTTCTCCATTCAATTTCTTAATCTCT 116 |||||||| |||| |||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 99 TCCACGCACACACATAATAAACTCTTCTTATCCTCTTCTCCATTCAATCTCTTATTCTCT 158 Query 117 CTTCCTTCCTTTATATACCTTAAGCAGCAACGTTTCACTCCTCTGttcttcttcttcttc 176 |||||||||| ||||||||||| |||||||| | | ||||||||||||||||||| Sbjct 159 TTTCCTTCCTTCATATACCTTAAACAGCAACG--T---T-CTCTGTTCTTCTTCTTCTTT 212 Query 177 ttcttcctctgtttctcttTGACTACTTCCATGGTGGCCTCGGACACAGACACGGACTCA 236 |||||||||||||| ||||| || ||||||||| ||| |||||||||||||||||||||| Sbjct 213 TTCTTCCTCTGTTTTTCTTTCACAACTTCCATGTTGGACTCGGACACAGACACGGACTCA 272 Query 237 GGTCCTGTGGTTCCAACAACTGCACTCGTCACTTTCCTCCAGCGGGTCCAGCTCACGGCA 296 |||||||||||| ||||||| ||||||||||||||||||||| || |||| ||||||| Sbjct 273 GGTCCTGTGGTTGCAACAACCAAACTCGTCACTTTCCTCCAGCGTGTGCAGCACACGGCA 332 Query 297 CTTCGATCATACCCTAAAAAACAAATC-CCTGATCCCAAATCCTACATTGATCTATCTCT 355 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 333 CTTCGATCATACCCTAAAAAACAAA-CGCCTGATCCCAAATCCTACATTGATCTATCTCT 391 Query 356 CAAACGTCCCTACAATCTCTCCACCATTGAATCAGCCTTCAACGATCTCACGAGCGAGTC 415 |||||||||||||| |||||||||||| |||||||||||| | |||||||||||||||| Sbjct 392 CAAACGTCCCTACAGTCTCTCCACCATCGAATCAGCCTTCGATGATCTCACGAGCGAGT- 450 Query 416 ACATCATGACCAGTCAGTGCCAGTGGAGAAGCTTGAAAAGTTCGTTAAGAAATACTTCGA 475 || ||||||||| ||||||||||||||| ||||||||||||||| ||| |||| || || Sbjct 451 -CA-CATGACCAGCCAGTGCCAGTGGAGACGCTTGAAAAGTTCGTCAAGGAATATTTTGA 508 Query 476 CGGCGCAGGAGAGGATCTGCTGCACCACGAACCAGTGGATTTCTTCTCAGATCCCTCCGG 535 ||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 509 CGGTGCAGGGGAGGATCTGCTGCACCACGAACCAGTAGATTTCGTCTCAGATCCCTCCGG 568 Query 536 CTTCCTCTCCAACGTGGAGAACGAACAAGTCAGAGAATGGGCGCGTGAGGTACACGGCCT 595 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 569 CTTCCTCTCCAACGTGGAGAACGAAGAAGTCAGAGAATGGGCGCGTGAGGTACACGGTCT 628 Query 596 CTGGAGTAACT-TGAGCTGCAGAGTCTCTGACTCAGTAATAGAGTCT-CATGACCGGCAC 653 ||||| || | ||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct 629 TTGGAG-AAATCTGAGCTGCAGAGTCTCTGACTCAGTAAGAGAGTCTGC-CGACCGGCAC 686 Query 654 ACGCTTCTGCCGTTGCCGGAACCGGTTATTATTCCCGGTTCGAGATTCAGAGAAGTTTAC 713 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 687 ACGCTTCTACCGTTGCCGGAACCGGTTATCATTCCCGGTTCGAGATTCAGAGAAGTCTAT 746 Query 714 TACTGGGATTCTTATTGGGTCATCAAAGGACTTATGACGAGTAAAATGTTCACTACCGCC 773 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 747 TACTGGGATTCTTATTGGGTCATCAAAGGACTTATGACGAGTCAAATGTTCACTACCGCC 806 Query 774 AAAGGTTTAGTGACGAATCTGATGTCACTTGTGGAGACTTATGGTTACGCTTTGAACGGT 833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 807 AAAGGTTTAGTGACGAATCTGATGTCACTTGTGGAGACTTATGGTTACGCTTTGAACGGT 866 Query 834 GCTAGAGCTTATTACACTAACAGAAGCCAACCACCTTTGTTGAGCTCAATGGTCTATGAG 893 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 867 GCTAGAGCTTATTATACTAACAGAAGCCAACCACCTTTGTTGAGCTCCATGGTCTATGAA 926 Query 894 ATTTATAATGTAACCAAAGATGAAGAACTTGTGAGGAAAGCAATCCCTGTACTTCTCAAA 953 ||||||||||| || ||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 927 ATTTATAATGTGACAAAAGATGAAGAACTTGTGAGGAAAGCAATCCCTCTGCTTCTCAAA 986 Query 954 GAGTACAAGTTTTGGAACTCAGGAAAACATAAAGTGGTTATTCGAGATGCTAATGGTTAT 1013 |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 987 GAGTACGAGTTTTGGAACTCAGGAAAACATAAAGTGGTTATTCGAGACGCTAATGGTTAT 1046 Query 1014 GATCATGTTTTAAGCCGTTATTATGCTATGTGGAACATGCCAAGGCCTGAATCCTCTGTT 1073 ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1047 GATCACGTTTTGAGCCGTTATTATGCTATGTGGAACAAGCCAAGGCCTGAATCCTCTGTT 1106 Query 1074 TTCGATGAAGAATCCGCTTCAGGGTTCTCGACTATGTTAGAGAAACAACGGTTCCATCGA 1133 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1107 TTCGATGAAGAATCTGCTTCAGGGTTCTCGACTATGTTAGAGAAACAACGGTTCCATCGA 1166 Query 1134 GATATAGCCACGGCTGCTGAATCAGGATGCGATTTCAGCACGCGATGGATGAGGGATCCT 1193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1167 GATATAGCCACGGCTGCTGAATCAGGATGCGATTTCAGCACGCGATGGATGAGGGATCCT 1226 Query 1194 CCTAACTTCACAACGATGGCTACAACATCAGTTGTACCTGTTGATCTAAATGTTTTTCTT 1253 ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1227 CCTAATTTCACAACGATGGCTACAACATCAGTGGTTCCTGTTGATCTAAATGTTTTTCTT 1286 Query 1254 CTCAAGATGGAACTCGATATAGCATTCATGATGAAGATTTCCGGGGATAAAAAAGGTTCA 1313 ||||||||||||||||||||||| |||||||||||| |||| || ||| |||| |||||| Sbjct 1287 CTCAAGATGGAACTCGATATAGCGTTCATGATGAAGGTTTCTGGAGATCAAAATGGTTCA 1346 Query 1314 GGCCGTTTTTTGAAAGCGTCAAAAGCGAGAGAGAAAGCGTTTGAAGCTGTGTTTTGGAAT 1373 | ||||||| |||||||||||||||||||||||||||||||| || | ||||||||||| Sbjct 1347 GACCGTTTTGTGAAAGCGTCAAAAGCGAGAGAGAAAGCGTTTCAAACCGTGTTTTGGAAC 1406 Query 1374 GAGAAAGCAGGACAATGGCTAGATTACTGGCTTTCATCGAATGGTGATGAGCCTGAGACA 1433 ||||||||||| |||||||| |||||||||||||| || | |||||| || |||||||| Sbjct 1407 GAGAAAGCAGGGCAATGGCTGGATTACTGGCTTTCCTCCAGTGGTGAGGAATCTGAGACA 1466 Query 1434 TGGAAAGCTGAGAACCAGAACACCAATGTTTTTGCGTCTAACTTTGCTCCAATCTGGATT 1493 ||||| ||||||||||| |||||||| || ||||||||||||||||| |||||||||||| Sbjct 1467 TGGAAGGCTGAGAACCAAAACACCAACGTCTTTGCGTCTAACTTTGCACCAATCTGGATT 1526 Query 1494 AATTCCTTCAATTCAGATGAAGTTCTTGTCAAGAAAGTCGTGAAAGCTCTTAAAAACTCA 1553 |||||| |||||||||||||| ||||||||||||||| |||| ||||||||| |||||| Sbjct 1527 AATTCCATCAATTCAGATGAAAATCTTGTCAAGAAAGTTGTGACAGCTCTTAAGAACTCA 1586 Query 1554 GGGCTCATTGCTCCCGCTGGAATCCTAACCTCTTTGACAAATTCGGGACAACAATGGGAT 1613 ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| Sbjct 1587 GGGCTCATTGCTCCCGCTGGAATCCTAACTTCTTTGACAAACTCAGGACAACAATGGGAT 1646 Query 1614 TCTCCGAATGGATGGGCACCGCAACAAGATATGATCGTTACAGGGCTCGCGA-GATCGAG 1672 ||||||||||||||||||||||||||||| |||||||| |||||||||| || ||||||| Sbjct 1647 TCTCCGAATGGATGGGCACCGCAACAAGAGATGATCGTCACAGGGCTCG-GAAGATCGAG 1705 Query 1673 T-TCAAAGGAAGCTAAAGAGATGGCAGAGGATATTGCAAGGAGATGGATCAAAAGCAACT 1731 | | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1706 TGTAAAAG-AAGCTAAAGAGATGGCAGAGGATATTGCAAGGAGATGGATCAAAAGCAACT 1764 Query 1732 ATCTTGTTTACAAGAAAAGTGGGACTATCCATGAGAAGCTCAAAGTTACAGAGCTTGGTG 1791 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1765 ATCTTGTCTACAAGAAAAGTGGGACTATACATGAGAAGCTCAAAGTTACAGAGCTTGGTG 1824 Query 1792 AATATGGTGGTGGTGGAGAATATATGCCACAGACTGGATTCGGATGGTCAAATGGAGTTA 1851 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1825 AATATGGTGGTGGAGGAGAATATATGCCACAGACCGGATTCGGATGGTCAAATGGAGTTA 1884 Query 1852 TATTAGCATTCTTGGAGGAATTTGGATGGCCCTCTCACCTCAACATTGAATCCTAGATTT 1911 | ||||||||||||||||||| ||||||||||||||| || | ||||||| ||||||||| Sbjct 1885 TCTTAGCATTCTTGGAGGAATATGGATGGCCCTCTCATCTTAGCATTGAAGCCTAGATTT 1944 Query 1912 ACTAATTCTTATT-AAA 1927 ||||| | ||||| ||| Sbjct 1945 ACTAAGT-TTATTGAAA 1960 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95431236045 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5