BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945701
Length=1927
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24040.1 | Symbols: ATTRE1, TRE1 | trehalase 1 | chr4:124881... 2789 0.0
> AT4G24040.1 | Symbols: ATTRE1, TRE1 | trehalase 1 | chr4:12488183-12491235
FORWARD LENGTH=2115
Length=2115
Score = 2789 bits (1510), Expect = 0.0
Identities = 1799/1937 (93%), Gaps = 25/1937 (1%)
Strand=Plus/Plus
Query 1 TCA-AATTCAAACATTTGGCAATGAAATCACACAAACATAACAACCCTAATCTACTAATC 59
||| |||||||||||||||||||||||||| |||||| ||| ||||||||| |||| |||
Sbjct 39 TCAGAATTCAAACATTTGGCAATGAAATCATACAAACTTAATAACCCTAATTTACTCATC 98
Query 60 TCCACGCATACAC---ATAAACTCTTCTTATCCTCTTCTCCATTCAATTTCTTAATCTCT 116
|||||||| |||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 99 TCCACGCACACACATAATAAACTCTTCTTATCCTCTTCTCCATTCAATCTCTTATTCTCT 158
Query 117 CTTCCTTCCTTTATATACCTTAAGCAGCAACGTTTCACTCCTCTGttcttcttcttcttc 176
|||||||||| ||||||||||| |||||||| | | |||||||||||||||||||
Sbjct 159 TTTCCTTCCTTCATATACCTTAAACAGCAACG--T---T-CTCTGTTCTTCTTCTTCTTT 212
Query 177 ttcttcctctgtttctcttTGACTACTTCCATGGTGGCCTCGGACACAGACACGGACTCA 236
|||||||||||||| ||||| || ||||||||| ||| ||||||||||||||||||||||
Sbjct 213 TTCTTCCTCTGTTTTTCTTTCACAACTTCCATGTTGGACTCGGACACAGACACGGACTCA 272
Query 237 GGTCCTGTGGTTCCAACAACTGCACTCGTCACTTTCCTCCAGCGGGTCCAGCTCACGGCA 296
|||||||||||| ||||||| ||||||||||||||||||||| || |||| |||||||
Sbjct 273 GGTCCTGTGGTTGCAACAACCAAACTCGTCACTTTCCTCCAGCGTGTGCAGCACACGGCA 332
Query 297 CTTCGATCATACCCTAAAAAACAAATC-CCTGATCCCAAATCCTACATTGATCTATCTCT 355
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 333 CTTCGATCATACCCTAAAAAACAAA-CGCCTGATCCCAAATCCTACATTGATCTATCTCT 391
Query 356 CAAACGTCCCTACAATCTCTCCACCATTGAATCAGCCTTCAACGATCTCACGAGCGAGTC 415
|||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 392 CAAACGTCCCTACAGTCTCTCCACCATCGAATCAGCCTTCGATGATCTCACGAGCGAGT- 450
Query 416 ACATCATGACCAGTCAGTGCCAGTGGAGAAGCTTGAAAAGTTCGTTAAGAAATACTTCGA 475
|| ||||||||| ||||||||||||||| ||||||||||||||| ||| |||| || ||
Sbjct 451 -CA-CATGACCAGCCAGTGCCAGTGGAGACGCTTGAAAAGTTCGTCAAGGAATATTTTGA 508
Query 476 CGGCGCAGGAGAGGATCTGCTGCACCACGAACCAGTGGATTTCTTCTCAGATCCCTCCGG 535
||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 509 CGGTGCAGGGGAGGATCTGCTGCACCACGAACCAGTAGATTTCGTCTCAGATCCCTCCGG 568
Query 536 CTTCCTCTCCAACGTGGAGAACGAACAAGTCAGAGAATGGGCGCGTGAGGTACACGGCCT 595
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 569 CTTCCTCTCCAACGTGGAGAACGAAGAAGTCAGAGAATGGGCGCGTGAGGTACACGGTCT 628
Query 596 CTGGAGTAACT-TGAGCTGCAGAGTCTCTGACTCAGTAATAGAGTCT-CATGACCGGCAC 653
||||| || | ||||||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 629 TTGGAG-AAATCTGAGCTGCAGAGTCTCTGACTCAGTAAGAGAGTCTGC-CGACCGGCAC 686
Query 654 ACGCTTCTGCCGTTGCCGGAACCGGTTATTATTCCCGGTTCGAGATTCAGAGAAGTTTAC 713
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 687 ACGCTTCTACCGTTGCCGGAACCGGTTATCATTCCCGGTTCGAGATTCAGAGAAGTCTAT 746
Query 714 TACTGGGATTCTTATTGGGTCATCAAAGGACTTATGACGAGTAAAATGTTCACTACCGCC 773
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 747 TACTGGGATTCTTATTGGGTCATCAAAGGACTTATGACGAGTCAAATGTTCACTACCGCC 806
Query 774 AAAGGTTTAGTGACGAATCTGATGTCACTTGTGGAGACTTATGGTTACGCTTTGAACGGT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 AAAGGTTTAGTGACGAATCTGATGTCACTTGTGGAGACTTATGGTTACGCTTTGAACGGT 866
Query 834 GCTAGAGCTTATTACACTAACAGAAGCCAACCACCTTTGTTGAGCTCAATGGTCTATGAG 893
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 867 GCTAGAGCTTATTATACTAACAGAAGCCAACCACCTTTGTTGAGCTCCATGGTCTATGAA 926
Query 894 ATTTATAATGTAACCAAAGATGAAGAACTTGTGAGGAAAGCAATCCCTGTACTTCTCAAA 953
||||||||||| || ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 927 ATTTATAATGTGACAAAAGATGAAGAACTTGTGAGGAAAGCAATCCCTCTGCTTCTCAAA 986
Query 954 GAGTACAAGTTTTGGAACTCAGGAAAACATAAAGTGGTTATTCGAGATGCTAATGGTTAT 1013
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 987 GAGTACGAGTTTTGGAACTCAGGAAAACATAAAGTGGTTATTCGAGACGCTAATGGTTAT 1046
Query 1014 GATCATGTTTTAAGCCGTTATTATGCTATGTGGAACATGCCAAGGCCTGAATCCTCTGTT 1073
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1047 GATCACGTTTTGAGCCGTTATTATGCTATGTGGAACAAGCCAAGGCCTGAATCCTCTGTT 1106
Query 1074 TTCGATGAAGAATCCGCTTCAGGGTTCTCGACTATGTTAGAGAAACAACGGTTCCATCGA 1133
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 TTCGATGAAGAATCTGCTTCAGGGTTCTCGACTATGTTAGAGAAACAACGGTTCCATCGA 1166
Query 1134 GATATAGCCACGGCTGCTGAATCAGGATGCGATTTCAGCACGCGATGGATGAGGGATCCT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 GATATAGCCACGGCTGCTGAATCAGGATGCGATTTCAGCACGCGATGGATGAGGGATCCT 1226
Query 1194 CCTAACTTCACAACGATGGCTACAACATCAGTTGTACCTGTTGATCTAAATGTTTTTCTT 1253
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1227 CCTAATTTCACAACGATGGCTACAACATCAGTGGTTCCTGTTGATCTAAATGTTTTTCTT 1286
Query 1254 CTCAAGATGGAACTCGATATAGCATTCATGATGAAGATTTCCGGGGATAAAAAAGGTTCA 1313
||||||||||||||||||||||| |||||||||||| |||| || ||| |||| ||||||
Sbjct 1287 CTCAAGATGGAACTCGATATAGCGTTCATGATGAAGGTTTCTGGAGATCAAAATGGTTCA 1346
Query 1314 GGCCGTTTTTTGAAAGCGTCAAAAGCGAGAGAGAAAGCGTTTGAAGCTGTGTTTTGGAAT 1373
| ||||||| |||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct 1347 GACCGTTTTGTGAAAGCGTCAAAAGCGAGAGAGAAAGCGTTTCAAACCGTGTTTTGGAAC 1406
Query 1374 GAGAAAGCAGGACAATGGCTAGATTACTGGCTTTCATCGAATGGTGATGAGCCTGAGACA 1433
||||||||||| |||||||| |||||||||||||| || | |||||| || ||||||||
Sbjct 1407 GAGAAAGCAGGGCAATGGCTGGATTACTGGCTTTCCTCCAGTGGTGAGGAATCTGAGACA 1466
Query 1434 TGGAAAGCTGAGAACCAGAACACCAATGTTTTTGCGTCTAACTTTGCTCCAATCTGGATT 1493
||||| ||||||||||| |||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1467 TGGAAGGCTGAGAACCAAAACACCAACGTCTTTGCGTCTAACTTTGCACCAATCTGGATT 1526
Query 1494 AATTCCTTCAATTCAGATGAAGTTCTTGTCAAGAAAGTCGTGAAAGCTCTTAAAAACTCA 1553
|||||| |||||||||||||| ||||||||||||||| |||| ||||||||| ||||||
Sbjct 1527 AATTCCATCAATTCAGATGAAAATCTTGTCAAGAAAGTTGTGACAGCTCTTAAGAACTCA 1586
Query 1554 GGGCTCATTGCTCCCGCTGGAATCCTAACCTCTTTGACAAATTCGGGACAACAATGGGAT 1613
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1587 GGGCTCATTGCTCCCGCTGGAATCCTAACTTCTTTGACAAACTCAGGACAACAATGGGAT 1646
Query 1614 TCTCCGAATGGATGGGCACCGCAACAAGATATGATCGTTACAGGGCTCGCGA-GATCGAG 1672
||||||||||||||||||||||||||||| |||||||| |||||||||| || |||||||
Sbjct 1647 TCTCCGAATGGATGGGCACCGCAACAAGAGATGATCGTCACAGGGCTCG-GAAGATCGAG 1705
Query 1673 T-TCAAAGGAAGCTAAAGAGATGGCAGAGGATATTGCAAGGAGATGGATCAAAAGCAACT 1731
| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 TGTAAAAG-AAGCTAAAGAGATGGCAGAGGATATTGCAAGGAGATGGATCAAAAGCAACT 1764
Query 1732 ATCTTGTTTACAAGAAAAGTGGGACTATCCATGAGAAGCTCAAAGTTACAGAGCTTGGTG 1791
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1765 ATCTTGTCTACAAGAAAAGTGGGACTATACATGAGAAGCTCAAAGTTACAGAGCTTGGTG 1824
Query 1792 AATATGGTGGTGGTGGAGAATATATGCCACAGACTGGATTCGGATGGTCAAATGGAGTTA 1851
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1825 AATATGGTGGTGGAGGAGAATATATGCCACAGACCGGATTCGGATGGTCAAATGGAGTTA 1884
Query 1852 TATTAGCATTCTTGGAGGAATTTGGATGGCCCTCTCACCTCAACATTGAATCCTAGATTT 1911
| ||||||||||||||||||| ||||||||||||||| || | ||||||| |||||||||
Sbjct 1885 TCTTAGCATTCTTGGAGGAATATGGATGGCCCTCTCATCTTAGCATTGAAGCCTAGATTT 1944
Query 1912 ACTAATTCTTATT-AAA 1927
||||| | ||||| |||
Sbjct 1945 ACTAAGT-TTATTGAAA 1960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95431236045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5