BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945706
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24010.1 | Symbols: ATCSLG1, CSLG1 | cellulose synthase like... 1308 0.0
AT4G23990.1 | Symbols: ATCSLG3, CSLG3 | cellulose synthase like... 1242 0.0
AT4G24000.1 | Symbols: ATCSLG2, CSLG2 | cellulose synthase like... 965 0.0
> AT4G24010.1 | Symbols: ATCSLG1, CSLG1 | cellulose synthase like
G1 | chr4:12466345-12469844 FORWARD LENGTH=2413
Length=2413
Score = 1308 bits (708), Expect = 0.0
Identities = 864/937 (92%), Gaps = 20/937 (2%)
Strand=Plus/Plus
Query 1 AAAAA-AGAGTAACTAAAACGATGGAGCCTCATAGAAAGCACTCGGTCGTCGGCGCA-AT 58
||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| | ||
Sbjct 26 AAAAATAGAGTAACTAAAACGATGGAGACTCATAGAAAGAACTCGGTCGTCGGC-AACAT 84
Query 59 CCTCCACACGTGTTATCCGTGCGGGCGCACCATTCCATACAGAATCTACGCCGTATTTCA 118
||||||||||||| |||| ||| |||||||||||||||| |||||||||||| |||||||
Sbjct 85 CCTCCACACGTGTCATCCTTGCCGGCGCACCATTCCATATAGAATCTACGCCATATTTCA 144
Query 119 CACGTGTGGCATCATAGCTCTCATGTATCACCATGTACACTCACTTCTCACAGCAAACAA 178
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 145 CACGTGTGGCATCATAGCTCTCATGTATCACCATGTACACTCACTTGTCACAGCAAACAA 204
Query 179 CACTCTTATAACATGTCTTCTTCTCCTCTCCGATATGGTTCTCACCTTCATATGGGTAAC 238
|||||||||||||||||||||||||||||||||||| |||||| ||||||| |||| |||
Sbjct 205 CACTCTTATAACATGTCTTCTTCTCCTCTCCGATATTGTTCTCGCCTTCATGTGGGCAAC 264
Query 239 CACAACTTCCCTCCGGTTAAACCCGGTTCATCGGACCGAGTACCCTGAGAAATATGCAGC 298
||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 265 CACAACTTCCCTCCGCTTAAACCCGGTTCATCGGACCGAGTGCCCGGAGAAATATGCAGC 324
Query 299 TAAACCGGAGGACTTTCCGAAGCTGGACGTGTTTATATGCACGGCTGATCCGTACAAGGA 358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 325 TAAACCGGAGGACTTTCCAAAGCTGGACGTGTTTATATGCACGGCTGATCCGTACAAGGA 384
Query 359 GCCTCCGATGATGGTGGTTAACACCGCTTTATCTGTGATGGCATATGAATATCCGTCCGA 418
|||||| |||||||| ||||||||||||||||| |||||||| || || |||||||| ||
Sbjct 385 GCCTCCAATGATGGTTGTTAACACCGCTTTATCGGTGATGGCTTACGAGTATCCGTCAGA 444
Query 419 TAAGATCTCGGTCTATGTATCGGACGATGGAGGATCGTCGTTGACTTTGTTTGCTCTTAT 478
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 445 TAAGATCTCGGTGTATGTATCGGACGATGGAGGATCGTCGTTGACTTTCTTTGCTCTTAT 504
Query 479 GGAGGCTGCTAAATTCTCTGAGCATTGGTTGCCCTTTTGCAAGAAGAACAATGTTCAAGA 538
|| |||||||| |||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 505 TGAAGCTGCTAAGTTCTCTAAGCAGTGGTTGCCCTTTTGCAAGAAGAATAATGTTCAAGA 564
Query 539 TCGGTCTCCTGCAGTTTATTTCTCTTCAAAGTCAGATTCTCGGAGTGGTGAAGCTGAAAA 598
||||||||||| |||||||||||||||| ||||| ||||||| |||| ||||||||||||
Sbjct 565 TCGGTCTCCTGAAGTTTATTTCTCTTCAGAGTCACATTCTCGAAGTGATGAAGCTGAAAA 624
Query 599 TATTAAGTGTGAGGTGGAACAGATGATGTATGAAGACATGAAGAGTAGAGTAGAACATGT 658
||||| | || | || | | |||||||||||||||||||||||||||||
Sbjct 625 CCTTAAG----A--TG-A-----TG-T--ACGAAGACATGAAGAGTAGAGTAGAACATGT 669
Query 659 GGTGGAGAGTGGAAAAGTTGAGACTGCATTTATCACATACGATCAATTTCGTGGGGTATT 718
||||||||||||||||||||| ||||| |||||||||| ||| |||||||||||||||||
Sbjct 670 GGTGGAGAGTGGAAAAGTTGAAACTGCGTTTATCACATGCGACCAATTTCGTGGGGTATT 729
Query 719 CGATTTGTGGACCGACAAATTCACTCGTCATGACCATCCCACAATTATTCAGGTGTTGCA 778
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 730 CGATTTGTGGACCGACAAATTCAGTCGTCATGACCATCCCACAATTATTCAGGTGTTGCA 789
Query 779 AAATAGTGAGACAGATATGGACAATACCA-AAAAGTATATAATGCCAAACCTAATCTATG 837
|||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 790 AAATAGCGAGACAGATATGGACAATACCAGAAAA-TATATAATGCCAAACCTAATCTATG 848
Query 838 TTTCAAGAGAGAAGAGTAAAGTTTCACCACATCATTTCAAAGCCGGTGCTCTTAATACTT 897
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 849 TTTCAAGAGAGAAGAGTAAAGTTTCACCACATCATTTCAAAGCTGGTGCTCTTAATACTT 908
Query 898 TGCTACGAGTGTCTGGAGTCATGACGAATGCACCGAT 934
|||||||||| || || || ||||| ||| |||||||
Sbjct 909 TGCTACGAGTATCAGGGGTGATGACAAATTCACCGAT 945
> AT4G23990.1 | Symbols: ATCSLG3, CSLG3 | cellulose synthase like
G3 | chr4:12456489-12460753 FORWARD LENGTH=2513
Length=2513
Score = 1242 bits (672), Expect = 0.0
Identities = 842/921 (91%), Gaps = 23/921 (2%)
Strand=Plus/Plus
Query 18 ACGATGGAGCCTCATAGAAAGCACTCGGTCGTCGGCGCAATCCTCCACACGTGTTATCCG 77
|||||||||||||| ||||| |||||||||| || | ||| ||||||||||||| ||||
Sbjct 57 ACGATGGAGCCTCACAGAAAACACTCGGTCGGCGACACAACCCTCCACACGTGTCATCCT 116
Query 78 TGCGGGCGCACCATTCCATACAGAATCTACGCCGTATTTCACACGTGTGGCATCATAGCT 137
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 117 TGCCGGCGCACCATTCCATATAGAATCTACGCCGTATTTCACACGTGTGGCATCATAGCC 176
Query 138 CTCATGTATCACCATGTACACTCACTTCTCACAGCAAACAAC-ACTCTTATAACATGTCT 196
||||||||||||||||||||||||||||||||||||||| || ||||| || || | |||
Sbjct 177 CTCATGTATCACCATGTACACTCACTTCTCACAGCAAAC-ACAACTCTAATCACGTCTCT 235
Query 197 TCTTCTCCTCTCCGATATGGTTCTCACCTTCATATGGGTAACCACAACTTCCCTCCGGT- 255
||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||
Sbjct 236 CCTTCTCCTCTCCGATATTGTTCTCGCCTTCATGTGGGCAACCACAACTTCCCTCCGGTA 295
Query 256 TAAACCCGGTTCATCGGACCGAGTACCCTGAGAAATATGCAGCTAAACCGGAGGACTTTC 315
|||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 296 TAAA-CCGGTTCGCCGGACCGAGTACCCTGAGAAATATGCAGCTGAACCGGAGGACTTCC 354
Query 316 CGAAGCTGGACGTGTTTATATGCACGGCTGATCCGTACAAGGAGCCTCCGATGATGGTGG 375
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CGAAACTGGACGTGTTTATATGCACGGCTGATCCGTACAAGGAGCCTCCGATGATGGTGG 414
Query 376 TTAACACCGCTTTATCTGTGATGGCATATGAATATCCGTCCGATAAGATCTCGGTCTATG 435
| ||||| || ||||| |||||||| || || |||||||||||||||||||| ||||| |
Sbjct 415 TCAACACTGCCTTATCGGTGATGGCTTACGAGTATCCGTCCGATAAGATCTCAGTCTACG 474
Query 436 TATCGGACGATGGAGGATCGTCGTTGACTTTGTTTGCTCTTATGGAGGCTGCTAAATTCT 495
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 475 TATCGGACGATGGAGGTTCGTCGTTGACTTTGTTTGCTCTTATGGAGGCAGCTAAGTTCT 534
Query 496 CTGAGCATTGGTTGCCCTTTTGCAAGAAGAACAATGTTCAAGATCGGTCTCCTGCAGTTT 555
|| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||
Sbjct 535 CTAAGCATTGGTTGCCTTTTTGCAAGAAGAATAATGTTCAAGATCGGTCTCCTGAAGTTT 594
Query 556 ATTTCTCTTCAAAGTCA-GATTCTCGGAGTGGTGAAGCTGAAAATATTAAGTGTGAGGTG 614
||||||| ||||||| | | ||||||||||| ||||||||||||||| ||| | ||
Sbjct 595 ATTTCTCATCAAAGTTACG-TTCTCGGAGTGATGAAGCTGAAAATATCAAG----A--TG 647
Query 615 GAACAGATGATGTATGAAGACATGAAGAGTAGAGTAGAACATGTGGTGGAGAGTGGAAAA 674
| || | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 -A-----TG-T--ACGAAGACATGAAGAGTAGAGTAGAACATGTGGTGGAGAGTGGAAAA 698
Query 675 GTTGAGACTGCATTTATCACATACGATCAATTTCGTGGGGTATTCGATTTGTGGACCGAC 734
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 699 GTTGAGACTGCATTTATCACATGCGATCAATTTCGTGGGGTATTCGATTTGTGGACCGAC 758
Query 735 AAATTCACTCGTCATGACCATCCCACAATTATTCAGGTGTTGCAAAATAGTGAGACA-GA 793
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||
Sbjct 759 AAATTCACTCGTCATGACCATCCCACAATTATTCAGGTGCTACAAAATAGTGAGA-ATGA 817
Query 794 TATGGACAATACCAAAAAGTATATAATGCCAAACCTAATCTATGTTTCAAGAGAGAAGAG 853
||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 818 TATGGACGATACCAAAAAATATATAATGCCAAACCTAATCTACGTTTCAAGAGAGAAGAG 877
Query 854 TAAAGTTTCACCACATCATTTCAAAGCCGGTGCTCTTAATACTTTGCTACGAGTGTCTGG 913
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 878 TAAAGTTTCATCACATCATTTCAAAGCCGGTGCTCTTAATACCTTGCTACGAGTGTCTGG 937
Query 914 AGTCATGACGAATGCACCGAT 934
||| ||||||||| |||||||
Sbjct 938 AGTGATGACGAATTCACCGAT 958
> AT4G24000.1 | Symbols: ATCSLG2, CSLG2 | cellulose synthase like
G2 | chr4:12462030-12465625 FORWARD LENGTH=2435
Length=2435
Score = 965 bits (522), Expect = 0.0
Identities = 759/867 (88%), Gaps = 42/867 (5%)
Strand=Plus/Plus
Query 59 CCTCCACACGTGTTATCCGTGCGGGCGCACCATTCCATACAGAATCTACGCCGTATTTCA 118
||||||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 142 CCTCCACACGTGTCATCCCTGCCGGCGAACCATTCCATACAGAATCTACGCCGTATTTCA 201
Query 119 CACGTGTGGCATCATAGCTCTCATGTATCACCATGTACACTCACTTCTCA-CAGCAAACA 177
||||||||||||||||||||||||||||||||||||||||||| || ||| | |||||||
Sbjct 202 CACGTGTGGCATCATAGCTCTCATGTATCACCATGTACACTCAATTGTCAAC-GCAAACA 260
Query 178 ACACTCTTATAACATGTCTTCTTCTCCTCTCCGATATGGTTCTCACCTTCATATGGGTAA 237
||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |||| ||
Sbjct 261 ACACTCTAATAACATGTCTTCTTCTCCTCTCCGATATTGTTCTCGCCTTCATGTGGGCAA 320
Query 238 CCACAACTTCCCTCCGGTTAAACCCGGTTCATCGGACCGAGTACCCTGAGAAATATGCAG 297
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
Sbjct 321 CCACAACTTCCCTCCGGTTAAACCCGATTCATCGGACCGAGTACCCTGAAAAATATGCTG 380
Query 298 CTAAACCGGAGGACTTTCCGAAGCTGGACGTGTTTATATGCACGGCTGATCCGTACAAGG 357
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 381 CTAAACCGGAGGACTTTCCAAAGCTGGACGTTTTTATATGCACGGCTGATCCGTACAAGG 440
Query 358 AGCCTCCGATGATGGTGGTTAACACCGCTTTATCTGTGATGGCATATGAATATCCGTC-C 416
|||||||||||||||||||||||||||||||||| |||||||| || || |||||||| |
Sbjct 441 AGCCTCCGATGATGGTGGTTAACACCGCTTTATCGGTGATGGCTTACGAGTATCCGTCTC 500
Query 417 GATAAGATCTCGGTCTATGTATCGGACGATGGAGGATCGTCGTTGACTTTGTTTGCTCTT 476
|||||||||| || || |||||||||||||||||||| || ||||||||||||||||||
Sbjct 501 -ATAAGATCTCAGTGTACGTATCGGACGATGGAGGATCTTCCTTGACTTTGTTTGCTCTT 559
Query 477 ATGGAGGCTGCTAAATTCTCTGAGCATTGGTTGCCCTTTTGCAAGAAGAACAATGTTCAA 536
||||||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 560 ATGGAGGCTGCCAAGTTCTCTAAGCATTGGTTGCCCTTTTGCAAGAATAACAATGTTCAA 619
Query 537 GATCGGTCTCCTGCAGTTTATTTCTCTTCAAAGTCAGATTCT-CGGAGTGGTGAAGCTGA 595
||||| ||||||| ||||||||| |||||||||||| ||||| || |||| |||||||||
Sbjct 620 GATCGCTCTCCTGAAGTTTATTTTTCTTCAAAGTCACATTCTTCG-AGTGATGAAGCTGA 678
Query 596 AAATATTAAGTGTGAGGTGGAACAGATGATGTATGAAGACATGAAGAGTAGAGTAGAACA 655
|||| ||||| | || | || | | |||||||||||||||||||| |||||
Sbjct 679 AAATCTTAAG----A--TG-A-----TG-T--ACGAAGACATGAAGAGTAGAGTCGAACA 723
Query 656 TGTGGTGGAGAGTGGAAAAGTTGAGACTGCATTTATCACATACGATCAATTTCGTGGGGT 715
|||||| ||||| ||||||||||||||||| |||||| ||| |||||||||| || | ||
Sbjct 724 TGTGGTCGAGAGCGGAAAAGTTGAGACTGCGTTTATCGCATGCGATCAATTTAGTTGTGT 783
Query 716 ATTCGATTTGTGGACCGACAAATTCACTCGTCATGACCATCCCACAATTATTCAGGTGTT 775
|||||| ||||||| || ||||||||||||||||||||||| || |||||| | | ||
Sbjct 784 GTTCGATCTGTGGACAGATAAATTCACTCGTCATGACCATCCTACCATTATT-ATG-GT- 840
Query 776 GCAAAATAGTGAGACAGATATGGACAATACCAAAAAGTATATAATGCCAAACCTAATCTA 835
|| || | ||| | | | | || | | | | || | |||||||||| || ||
Sbjct 841 GC----TAC--A-ACATA-ACG-A-AA--C-AGA--G-ATG-A-TGCCAAACCTTATATA 882
Query 836 TGTTTCAAGAGAGAAGAGTAAAGTTTCACCACATCATTTCAAAGCCGGTGCTCTTAATAC 895
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 TGTTTCAAGAGAAAAGAGTAAAGTTTCACCACATCATTTCAAAGCCGGTGCTCTTAATAC 942
Query 896 TTTGCTACGAGTGTCTGGAGTCATGAC 922
|||| |||| || |||| || |||||
Sbjct 943 TTTGTTACGTGTATCTGCCGTGATGAC 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5