BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945720
Length=797
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23890.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1197 0.0
> AT4G23890.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Protein of unknown
function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to
287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa
- 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes
- 111 (source: NCBI BLink). | chr4:12420414-12421464 REVERSE
LENGTH=1051
Length=1051
Score = 1197 bits (648), Expect = 0.0
Identities = 738/782 (94%), Gaps = 3/782 (0%)
Strand=Plus/Plus
Query 15 AAAA-AGTTATGGCAACTTCTTCGATCACTATCCCGACCATGAGAACTCCGATTCATCGA 73
|||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 111 AAAATAGTTATGGCGACTTCTTCGATCACTATCCCGACCATTAGAACTCCGATTCATCGA 170
Query 74 TCGAAATTTCTAGGCCAAACCCATCAATTTTCAACTGCAAACCAGTCGATTTTCCCGCCT 133
|| ||||||||||||||||| |||||||||||||||| ||||| |||| |||||||||||
Sbjct 171 TCAAAATTTCTAGGCCAAACACATCAATTTTCAACTGTAAACCGGTCGGTTTTCCCGCCT 230
Query 134 CCGAAACAGCAATCAAGAGTTTATCAAGTGAAGGCCATGGGTAAATTCAATCTATGGGAA 193
|| |||||||| |||| | | |||||||| ||||||||||||||||||||||||||||||
Sbjct 231 CCAAAACAGCAGTCAAAACTGTATCAAGTAAAGGCCATGGGTAAATTCAATCTATGGGAA 290
Query 194 GTGATGGGAGGAAGAGGATTATGCAACGGAGAGAAAGGTATTGAGAAGGAGCTCAAGAGG 253
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 291 GTGATGGGAGGAAGAGGATTATGCAACGGAGAGAAAGGTATTGAGAAGGAGCTCCAGAGG 350
Query 254 AACATTGAAGACGAGCAAGAGACATCAAAGGCTGAGAACAACGAGACAGAGAAAGAGAGC 313
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 351 AACATTGAAGACGAGCAAGAGACATCAAAGGCTGAGAACAACGAGACAGAGAGAGAGAGC 410
Query 314 GATGACAGTAACTTGTCGTTTAAAGTACCTGAAGATGGTTTTGACAAAGAGATGATGGGT 373
||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 411 GATGACAGTAACTTGTCTTTTAAAGTACCTGAAGATGGTTTCGAGAAAGAGATGATGGGT 470
Query 374 CTCACTGGAGGATTTCCCGGTGGCGAAAAGGGATTGCAAACGTTCATTGaaaaaaaCCCA 433
||||| |||||||||||||||||||||||||| || ||||||| || |||||||| |||
Sbjct 471 CTCACAGGAGGATTTCCCGGTGGCGAAAAGGGTTTAAAAACGTTTATCGAAAAAAATCCA 530
Query 434 CCACCGCCACCGA-CGCCACCACCTGCAAAACGAGGAACCGATGCATCCGCGGTTGCTAC 492
||||| || || | | |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 531 CCACCTCCTCC-ACCACCACCACCTGCAAAACAAGGAAGCGATGCATCCGCGGTTGCTAC 589
Query 493 AGATAAGAAGCCGAAAGCGCCCGAGCTACCCCTTCTCATGCCGGGAATGATCGCTATAGT 552
|||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||
Sbjct 590 AGATAAGAAGCCGAAAGCGCCCAAGCTACCCCTTCTCATGCCGGGGATGATTGCTATAGT 649
Query 553 CAAGAACCAGAACAGCCCGTATCACATGTATTGTGGGATTGTGCAGAGGATCACTGATGG 612
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 650 CAAGAACCAGAACAGTCCGTATCACATGTATTGTGGAATTGTGCAGAGGATCACTGATGG 709
Query 613 AAAAGCTGGTGTCTTGTTCGAAGGAGGAAACTGGGACCGTCTCATTACTTTCAGGCTTGA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AAAAGCTGGTGTCTTGTTCGAAGGAGGAAACTGGGACCGTCTCATTACTTTCAGGCTTGA 769
Query 673 AGAGCTCGAGCGAAGAGAGAAAGGTCCACCGGGTAAGAATCCAAAGTCTTGTATTCTTGA 732
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 770 AGAGCTTGAACGAAGAGAAAAAGGTCCACCGGGTAAGAATCCAAAGTCTTGTATTCTCGA 829
Query 733 GCCTCTTATCGAACAGATGCAAAAGGAGGAGGCAGCACCATAAGCGATCTTCTCTTCTCT 792
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 830 GCCTCTTATCGAACAGATGCAAAAGGAAGAGGCAGCACCATAAGTGATCTTCTCTTCTCT 889
Query 793 GT 794
||
Sbjct 890 GT 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38780761484
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5