BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945721

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G23885.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   387    4e-107


> AT4G23885.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G24165.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr4:12419394-12420467 FORWARD LENGTH=539
Length=539

 Score =  387 bits (209),  Expect = 4e-107
 Identities = 256/277 (92%), Gaps = 9/277 (3%)
 Strand=Plus/Plus

Query  1    ACGAAAGAGCGAAAGAGAAGATGAACGTAGTTCACGGTTTGAAGAGGATTCCTCGCATCA  60
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   ACGAAAGAGCGAAA-AGAAGATGAACGTAGTTCACGGTTTGAAGAGGATTCCTCGCATCA  118

Query  61   AATTTCCACAGCGTCATGTCAATCCTTCAGTCT-CAGAGGGAAAGACTCAGGTGGCAAAT  119
            |||| || ||| | ||| | |||||||||| || |||||||||||| |||||||||||||
Sbjct  119  AATTCCCTCAGAGACATATTAATCCTTCAG-CTTCAGAGGGAAAGAGTCAGGTGGCAAAT  177

Query  120  GAAGCTGATACATTATTCTTCTCCAATTTGAACA---TCCAAAAGACTA-TAGGCGGGAA  175
            |||||||||||||| |||||||||||||||||||   |||||||||||| | ||||||||
Sbjct  178  GAAGCTGATACATTGTTCTTCTCCAATTTGAACAACATCCAAAAGACTACT-GGCGGGAA  236

Query  176  GGCGTCATCGCAGCCAAAGCGTACGCCAGTTTCTAACGAAGAAATGGAAGCCATTTTGTT  235
            ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  237  GGCATCATCGCAGCCAAAGCGCACGCCAGTTTCAAACGAAGAAATGGAAGCCATTTTGTT  296

Query  236  GGGAGGCTGCCTCTGATCATT-CAACATGATCTGTTG  271
            |||||||||| |||||||||| |||||||||||||||
Sbjct  297  GGGAGGCTGCATCTGATCATTTCAACATGATCTGTTG  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12416134003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5