BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945736
Length=1958
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23740.1 | Symbols: | Leucine-rich repeat protein kinase fa... 2946 0.0
> AT4G23740.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr4:12366386-12369338 FORWARD LENGTH=2390
Length=2390
Score = 2946 bits (1595), Expect = 0.0
Identities = 1852/1974 (94%), Gaps = 26/1974 (1%)
Strand=Plus/Plus
Query 1 CTCGttttttt-ACTTTC-AAAAAATGGAAGCTTTGAGGATTTATCTATGGA-----T-T 52
||||||||||| |||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 271 CTCGTTTTTTTCACTTTCAAAAAAATGGAAGCTTTGAGGATTTATCTATGGAGTCTCTGT 330
Query 53 CTCTATCTGTGTTTGATTATCTATGGAGCAAACTCAGATCCATTAGAAGACAAACGCGCA 112
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 CTCTCTCTGTGTTTGATTATCTATGGAGCAAACTCAGATCCATTAGAAGACAAACGCGCA 390
Query 113 TTGCTTGAGTTTCTTACCATTATGCGTCCGACACGTTCACTGAACTGGAACGAGACTTCT 172
||||||||||||||||||||||||| || || |||||||| ||||||||||||||||||
Sbjct 391 TTGCTTGAGTTTCTTACCATTATGCAACCAACTCGTTCACTCAACTGGAACGAGACTTCT 450
Query 173 CAAGTCTGCAACATCTGGACCGGGGTTACTTGCAATCAAGACGGATCTCGAATCATAGCC 232
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 451 CAAGTCTGCAACATCTGGACCGGAGTTACTTGTAATCAAGACGGATCTCGAATCATAGCC 510
Query 233 GTTAGATTACCAGGGGTTGGGCTCAATGGTCAGATTCCTCCCAATACTATAAGCAGACTC 292
|||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 511 GTTAGATTACCAGGCGTTGGACTCAATGGTCAGATTCCTCCAAACACTATAAGCAGACTC 570
Query 293 TCTGGTCTCAGAGTTCTTAGTCTCAGATCCAATCTAATCACCGGTGTGTTTCC-AGCGGA 351
|| | |||||||||||||||||||||||||||||||||| |||| | |||||| | |||
Sbjct 571 TCAGCTCTCAGAGTTCTTAGTCTCAGATCCAATCTAATCTCCGGCGAGTTTCCTA-AGGA 629
Query 352 TTTTGTTGAGTTGAAAGATTTGGCCTTTCTTTATCTTCAAGACAACAAATTGTCTGGTCC 411
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 630 TTTTGTTGAGTTGAAAGATTTGGCCTTTCTTTATCTTCAGGATAACAACTTGTCTGGTCC 689
Query 412 TTTGCCTTTGGATTTCTCTGTTTGGAAGAATCTCACTAGTGTTAATCTTTCGAACAACGG 471
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 690 TTTGCCATTGGATTTCTCTGTTTGGAAGAATCTCACTAGTGTTAATCTCTCAAACAACGG 749
Query 472 GTTCAACGGGACAATCCCGGA-TTCGTTGCCCCGTCTTAGGCGGATTCAGTCGTTGAATC 530
|||||||||||||||||| || ||||||| | ||||||| ||||||||||||||| ||||
Sbjct 750 GTTCAACGGGACAATCCC-GAGTTCGTTGTCTCGTCTTAAGCGGATTCAGTCGTTAAATC 808
Query 531 TTGCTAACAATTCGCTTTCTGGTGATATTCCGGATCTGAGTGTGGTCTCTAGTCTGCAAC 590
||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| |
Sbjct 809 TTGCTAACAATACGCTTTCTGGTGATATTCCTGATCTGAGTGTGCTCTCTAGTCTGCAGC 868
Query 591 ACATTGACTTGTCCAACAATTATGATCTGGATGGACCGATACCGGATTGGCTTCGAAGAT 650
|||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| |
Sbjct 869 ACATTGACTTGTCCAACAATTATGATCTTGCTGGACCGATACCAGATTGGCTTCGAAGGT 928
Query 651 TCCCGTTGTCTTCTTATGCAGGCATCGATATTATTCCTCCTGGTGGTAACTACTCCCTCG 710
||||||| || |||||| ||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 929 TCCCGTTCTCGTCTTATACAGGCATTGATATTATTCCTCCTGGTGGTAACTACACCCTCG 988
Query 711 TTGA-GCCGCCACCACCTCGCAAGCAGACTCATCAGAAA-C--CGAAAGCTCACTTCTTG 766
|| | ||||||||||||| || ||||||||||||||||| | ||||||||| |||||||
Sbjct 989 TT-ACGCCGCCACCACCTAGCGAGCAGACTCATCAGAAACCGTCGAAAGCTCGCTTCTTG 1047
Query 767 GGACTATCCGAGACGGTTTTCTTGTTGATTGTTATAGCTGTTTCCATTGTAGTAG-TTGC 825
||||||||||||||||| ||||||||||||||||| |||||||||||||| || | || |
Sbjct 1048 GGACTATCCGAGACGGTGTTCTTGTTGATTGTTATTGCTGTTTCCATTGTGGT-GATTAC 1106
Query 826 GGCTTTGGCGTTTTTGTTGACTGTTTGTTACGTAAGAAGGAATTTAAGACACGGTGATGG 885
||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1107 GGCTTTGGCGTTTGTGTTGACTGTTTGTTACGTAAGAAGGAAGTTAAGACGCGGTGATGG 1166
Query 886 GGTCATTTCGGATAATAAGCTGCAGAAGAAAGGCGGGATGTCTCCAGAGAAATTCGTTTC 945
||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||
Sbjct 1167 GGTCATTTCGGATAATAAGTTGCAGAAGAAAGGTGGGATGTCTCCTGAGAAATTTGTTTC 1226
Query 946 GCGGATGGAAGATGTGAACAACCGGTTATCGTTCTTCGAAGGATGCAACTACTCGTTTGA 1005
||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 1227 TCGGATGGAAGATGTGAACAACCGGTTATCGTTCTTTGAAGGATGTAACTACTCTTTTGA 1286
Query 1006 TCTTGAGGATCTATTGAGAGCTTCTGCTGAGGTTCTTGGTAAGGGCACGTTTGGCACGAC 1065
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1287 TCTTGAGGATCTATTGAGAGCTTCTGCTGAGGTTCTTGGTAAAGGCACGTTTGGCACGAC 1346
Query 1066 GTACAAAGCTGTTCTTGAAGATGCAACTTCTGTTGCTGTGAAACGGCTTAAGGATGTTGC 1125
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1347 GTACAAAGCAGTTCTTGAAGATGCAACTTCTGTTGCTGTGAAACGTCTTAAGGATGTTGC 1406
Query 1126 GGCTGGTAAACGAGATTTCGAGCAGCAGATGGAGATCATCGGAGGTATTAAGCACGAAAA 1185
|||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1407 GGCTGGGAAACGTGATTTCGAGCAGCAGATGGAGATCATTGGAGGTATTAAGCATGAAAA 1466
Query 1186 CGTTGTGGAGCTTAAGGCATACTATTACTCTAAAGACGAGAAGCTAATGGTTTATGACTA 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 CGTTGTGGAGCTTAAGGCATACTATTACTCTAAAGACGAGAAGCTAATGGTTTATGACTA 1526
Query 1246 TTTCAGCCGAGGAAGTGTGGCTTCTTTGCTTCATGGTAATAGAGGAGAAAACCGGATTCC 1305
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1527 TTTCAGCCGAGGAAGTGTGGCTTCTTTGCTTCATGGTAACAGAGGAGAAAACAGGATTCC 1586
Query 1306 TTTAGACTGGGAAACCAGAATGAAAATCGCGATTGGCGCAGCTAAAGGGATTGCTCGTAT 1365
| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1587 TCTAGACTGGGAAACAAGAATGAAAATAGCTATTGGCGCAGCTAAAGGGATTGCTCGTAT 1646
Query 1366 CCATAAAGAAAACAATGGAAAACTCGTCCATGGAAACATCAAATCTTCGAATATATTCTT 1425
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1647 CCACAAAGAAAACAATGGAAAACTCGTCCATGGGAACATCAAATCTTCGAATATATTCTT 1706
Query 1426 GAATTCCGAGAATAATGGCTGTGTCTCTGATCTCGGATTAACCGCTGTAATGAGCCCCTT 1485
||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1707 GAATTCCGAGAGTAATGGCTGTGTCTCTGATCTTGGATTAACTGCTGTAATGAGTCCCTT 1766
Query 1486 GGCTCCACCAATATCGAGGCAAGCTGGTTACCGTGCACCAGAAGTAACCGACACAAGGAA 1545
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1767 GGCTCCACCGATATCGAGGCAAGCTGGTTACCGTGCACCAGAAGTAACCGACACAAGGAA 1826
Query 1546 GTCTTCTCAATTGTCAGATGTTTACAGCTTCGGCGTCGTTCTACTCGAACTACTCACCGG 1605
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 1827 GTCTTCTCAATTGTCAGATGTTTACAGCTTCGGTGTTGTTCTACTCGAACTACTCACGGG 1886
Query 1606 AAAATCGCCCATTCACACAACCGCAGGGGACGAGATCATTCACTTGGTTCGATGGGTACA 1665
|||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1887 AAAATCGCCCATTCACACTACCGCAGGGGACGAGATCATCCACTTGGTTAGATGGGTACA 1946
Query 1666 TTCGGTAGTGAGAGAGGAATGGACCGCAGAAGTATTCGACATAGAGCTTCTGAGGTATAC 1725
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1947 TTCAGTAGTGAGAGAGGAATGGACCGCAGAAGTATTCGACATCGAGCTTCTGAGGTATAC 2006
Query 1726 AAACATAGAGGAAGAGATGGTTGAGATGTTGCAGATTGCAATGTCATGTGTTGTGAAAGC 1785
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2007 AAACATAGAGGAAGAGATGGTTGAGATGTTGCAGATTGCAATGTCCTGTGTTGTGAAAGC 2066
Query 1786 AGCAGACCAGAGGCCGAAGATGTCTGATTTGGTTAGGCTCATCGAGAAGGTAGGAAACCG 1845
|||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2067 AGCAGATCAGAGGCCAAAGATGTCTGATTTGGTTAGGCTCATCGAGAACGTTGGAAACCG 2126
Query 1846 ACGAACCAGCATTGAACCTGAACCTGAACCCGAACTCAAACCCAAATCTGAAAATGGAGC 1905
|||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 2127 ACGAACCAGCATTGAACC-G-----GAACCCGAACTCAAACCCAAATCCGAAAATGGAGC 2180
Query 1906 CTCAGAGAGTTCCACACCGAGTGAAATTTGAATCTATCAAA-TTCAAACTGTTG 1958
|||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||
Sbjct 2181 CTCAGAGACTTCAACACCGAGTGAAATTTGAATCTATCAAAATTCTAACTGTTG 2234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96987452940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5