BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945737
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23730.1 | Symbols: | Galactose mutarotase-like superfamily... 1528 0.0
> AT4G23730.1 | Symbols: | Galactose mutarotase-like superfamily
protein | chr4:12362484-12365098 FORWARD LENGTH=1698
Length=1698
Score = 1528 bits (827), Expect = 0.0
Identities = 918/962 (95%), Gaps = 5/962 (1%)
Strand=Plus/Plus
Query 1 GTCTCTGAATCTGTGTTTT-AATGGAACCATCATCTGGAGTCGGTCCTGAGAAGAGACCA 59
|||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 452 GTCTCTGAATCTGT-TTTTGAATGGAACCATCATCTGGAACCGGTCCTGAGAAGAGACCA 510
Query 60 ACCGTTGACTTGGTCAAGGATAAAAATGGAACCGATCAGATTCTTCTTCAGAATCCTAAA 119
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
Sbjct 511 ACCGTTGACTTGGTCAAGGATAGAAATGGAACGGATCAGATTCTTCTTCAGAATCCTAGA 570
Query 120 GGCGCTTCTGTCAAGATTAGTTTACATGGAGGACAAGTTCTTTCTTGGAAGACTGAGAAG 179
||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 571 GGCGCCTCTGTAAAGATTAGTTTACATGGAGGACAAGTTCTTTCATGGAAGACTGACAAG 630
Query 180 GGTGATGAATTGTTATTCACCAGCACCAAGGCCAACTTGAAGCCTCCCTATCCGGTACGA 239
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 631 GGTGATGAATTGTTATTCAACAGCACCAAGGCCAACTTGAAGCCTCCCCATCCGGTACGA 690
Query 240 GGAGGAATCCCTATATGCTTTCCTCAGTTTGGAACTCGAGGATCACTTGAGCAACACGGT 299
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 691 GGAGGAATCCCTATATGCTTTCCTCAGTTTGGAACTCGGGGATCACTTGAGCAACACGGG 750
Query 300 TTTGCAAGAAACAAGATGTGGCTTGTGGAAAACAATCCACCTGCTTTACCTTCATTTGAC 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 751 TTTGCAAGAAACAAGATGTGGCTTGTAGAAAACAATCCACCTGCTTTACCTTCATTTGAC 810
Query 360 CCTACCGGCAAAGCCTATGTCGATTTGGTACTTAAGTCATCTGATGAAGACACGATGAGG 419
| || || ||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 811 TCAACTGGAAAAGCCTATGTTGATTTGGTGCTTAAGTCATCTGATGAAGATACGATGAGG 870
Query 420 ATCTGGCCTTACAGCTTTGAGTTTCATCTTAGAGTCTCATTGGCGTTAGATGGAAACCTA 479
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 871 ATCTGGCCTTACAGCTTTGAGTTTCATCTGAGAGTCTCATTGGCATTAGATGGGAACCTA 930
Query 480 ACACTGATATCACGAGTCAGAAACATCAATTCAAAGCCTTTTAGCTTTTCCATTGCTTAC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 ACACTGATATCACGAGTCAGAAACATCAATTCAAAGCCTTTTAGCTTTTCCATTGCTTAC 990
Query 540 CACACTTACTTCTCCATTTCCGATATTAGTGAAGTTAGACTTGAAGGGCTGGAAACTCTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 CACACTTACTTCTCCATTTCCGATATTAGTGAAGTTAGACTTGAAGGGCTGGAAACTCTT 1050
Query 600 GACTATCTTGATAACT-TGCATGATAGAGAGCGGTTCACAGAGCAAGGCGATGCATTAAC 658
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 GACTATCTTGATAA-TATGCATGATAGAGAGCGGTTCACAGAGCAAGGCGATGCATTAAC 1109
Query 659 CTTTGAATCCGAGATCGATAGAGTGTACCTAAATTCTAAAGACGTGGTTGCTGTTTTCGA 718
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1110 CTTTGAATCAGAGATCGATAGAGTGTACCTAAATTCTAAAGACGTGGTTGCCATTTTCGA 1169
Query 719 CCATGAAAGAAAACGTACATTCCTCATCAAGAAAGAAGGTCTACCTGATGTTGTGGTATG 778
|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1170 CCATGAGAGAAAACGCACATTCCTCATCAAGAAAGAAGGTCTACCTGATGTCGTGGTATG 1229
Query 779 GAATCCATGGGAGAAGAAAGCGAGAGCATTGACGGATTTGGGAGATGATGAGTATAAACA 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1230 GAATCCATGGGAGAAGAAAGCGAGAGCATTGACGGATTTGGGAGATGATGAGTATAGACA 1289
Query 839 CATGTTGTGTGTTGATGGAGCAGCCATTGAGAAACCAATCACATTGAAACCGGGTGAAGA 898
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1290 CATGTTGTGTGTGGATGGAGCAGCCATTGAGAAACCCATCACCTTGAAACCGGGTGAAGA 1349
Query 899 ATGGACCGGTAAATTAAACCTTTCGCTTGTTCTTTCCACCTGAAAAACCGGTACCGGTTA 958
||||||||| |||||| | || ||||||||||||||||||| |||| |||||||||||||
Sbjct 1350 ATGGACCGGGAAATTACATCTCTCGCTTGTTCTTTCCACCT-AAAACCCGGTACCGGTTA 1408
Query 959 TC 960
||
Sbjct 1409 TC 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47019161592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5