BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945741
Length=605
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23690.1 | Symbols: | Disease resistance-responsive (dirige... 929 0.0
> AT4G23690.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr4:12338871-12339747 REVERSE
LENGTH=877
Length=877
Score = 929 bits (503), Expect = 0.0
Identities = 577/612 (94%), Gaps = 8/612 (1%)
Strand=Plus/Plus
Query 1 TCACTAGTCTCTAGCTAACAATGGCATCTCTAGTAGTTAAACAACTCTTCAAATCCCTCT 60
|||||| |||||||||||| ||||||| |||||||| ||||||||||||||| ||||||
Sbjct 13 TCACTAATCTCTAGCTAACCATGGCATTTCTAGTAGAGAAACAACTCTTCAAAGCCCTCT 72
Query 61 TCTCATTCTTCTTATTAGTTTTACTCTTCTCCGATACCGTCCTATCGTTCCGAAAAACAC 120
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 73 TCTCATTCTTCTTATTAGTTTTACTCTTCTCCGATACCGTCTTATCTTTCCGAAAAACAA 132
Query 121 TTGATCC-GAAAAAACCCTGCAAACACTTCTCGTTCTATTTCCATGACATCCTCTACGAT 179
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 TCGA-CCAGAAAAAACCCTGCAAACACTTCTCGTTCTATTTCCATGACATCCTCTACGAT 191
Query 180 GGCGACAATGTAGCAAACGCAACCTCCGCCGCCATCGTGAGCCCTCCTGGACTAGGAAAC 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 192 GGCGACAATGTAGCAAACGCAACCTCCGCCGCCATCGTGAGCCCTCCAGGACTAGGAAAC 251
Query 240 TTCAAGTTTGGTAAGTTTGTGATCTTCGATGACCCCATAACAATGGACAAGAACTATCTC 299
|||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 252 TTCAAGTTCGGTAAGTTTGTGATCTTTGATGGGCCCATAACAATGGACAAGAACTATCTC 311
Query 300 TCAAAACCCCTGGCTCGGGCACAAGGCTTCTATTTCTATGACATGAAGATGGACTTCAAT 359
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TCAAAACCCGTGGCTCGCGCACAAGGCTTCTATTTCTATGACATGAAGATGGACTTCAAT 371
Query 360 GCGTGGTTTTGCTACACGTTGGTGTTTAACTCAACGGAATACAAGGGGACATTGAACATA 419
||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 372 TCGTGGTTTTCCTACACGTTGGTGTTTAACTCAACGGAACACAAAGGGACATTGAACATA 431
Query 420 ATGGGTGCTGATTTGATGATGGAGCCAACAAGAGATCTATCGGTCGTTGGTGGGACAGGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 ATGGGTGCTGATTTGATGATGGAGCCAACAAGAGATCTATCGGTCGTTGGTGGGACAGGT 491
Query 480 GACTTCTTCATGGCTCGTGGGATCGCTACCTTCGTGACGGATATATTTCAAGGGGCTAAG 539
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 492 GACTTCTTCATGGCTCGTGGGATCGCTACCTTCGTGACTGATTTATTTCAAGGGGCTAAG 551
Query 540 TATTTCAGAGTCAAGATGGATATTAAGCTCTATGAATGTTACTA-G-A--TAATAATATG 595
|||||| |||| |||||||||||||||||||||||||||||||| | | ||| ||| ||
Sbjct 552 TATTTCCGAGTTAAGATGGATATTAAGCTCTATGAATGTTACTAAGTAGCTAAGAATGTG 611
Query 596 T-TTT-GTTTGA 605
| ||| ||||||
Sbjct 612 TGTTTTGTTTGA 623
Score = 100 bits (54), Expect = 1e-20
Identities = 82/94 (87%), Gaps = 8/94 (9%)
Strand=Plus/Plus
Query 519 GATATATTTCAAGGGGCTAAGTATTTCAGAGTCAAGATGGATATTAAGCTCTATGAATGT 578
||| |||||||||||| |||||||||| |||| |||||||||||||||||||||||||||
Sbjct 724 GATTTATTTCAAGGGGATAAGTATTTCCGAGTTAAGATGGATATTAAGCTCTATGAATGT 783
Query 579 TACTAGA-TA---A-TAATAT--GTTTTGTTTGA 605
||||| | || | |||||| |||||||||||
Sbjct 784 TACTA-ACTAGCGAATAATATTTGTTTTGTTTGA 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29135805260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5