BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945746
Length=2371
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23640.1 | Symbols: TRH1, ATKT3, KUP4 | Potassium transporte... 3886 0.0
> AT4G23640.1 | Symbols: TRH1, ATKT3, KUP4 | Potassium transporter
family protein | chr4:12320152-12324486 REVERSE LENGTH=2847
Length=2847
Score = 3886 bits (2104), Expect = 0.0
Identities = 2277/2363 (96%), Gaps = 2/2363 (0%)
Strand=Plus/Plus
Query 1 TTACTCGCCGGCGGCTTAAATCATGGCTGATAGGAGAAACAGGTGTAACCAGATCCTCCT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TTACTCGCCGGCGGCTTGAATCATGGCTGATAGGAGAAACAGGTGTAACCAGATCCTCCT 233
Query 61 TTTAGCATATCAGAGTTTTGGCTTAGTGTTTGGAGATTTGAGTATTTCTCCTCTCTACGT 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 234 TTTAGCATACCAGAGTTTTGGCTTAGTGTTTGGAGATTTGAGTATTTCTCCTCTCTATGT 293
Query 121 GTATAAATGTACTTTCTACGGAGGATTGAAACATCACCAAACAGAAGATACCATATTTGG 180
|||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 294 GTATAAATGTACATTCTACGGAGGATTGAGACATCACCAAACAGAAGATACGATATTTGG 353
Query 181 CGCCTTTTCTTTGATATTTTGGACCATCACTCTCCTTTCACTCATCAAGTACATGGTTTT 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CGCGTTTTCTTTGATATTTTGGACCATCACTCTCCTTTCACTCATCAAGTACATGGTTTT 413
Query 241 TGTATTAAGTGCAGATGACAATGGTGAAGGAGGGATCTTTGCTTTGTATGCTTTGCTCTG 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TGTGTTAAGTGCAGATGACAATGGTGAAGGAGGGATCTTTGCTTTGTATGCTTTGCTCTG 473
Query 301 CAGACACGCTAGATTTTCTTTGCTTCCCAATCAGCAAGCTGCTGATGAAGAAATCTCCAC 360
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 474 CAGACACGCAAGATTTTCTTTGCTTCCAAATCAGCAAGCTGCTGATGAAGAAATCTCTAC 533
Query 361 ATACTATGGCCCTGGAGATGCAAGTAGAAATTTGCCTGGTTCTGCTTTCAAAAGCCTTAT 420
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 534 ATACTATGGTCCTGGAGATGCAAGTAGAAATTTGCCTAGTTCTGCTTTCAAAAGCCTTAT 593
Query 421 AGAACGAAATAAAAGATCAAAAACTGCTTTGCTTGTTTTAGTCTTGGTAGGAACTTCCAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AGAACGAAATAAAAGATCAAAAACTGCTTTGCTTGTTTTAGTCTTGGTAGGAACTTCCAT 653
Query 481 GGTAATAACCATCGGTGTCCTTACACCAGCAATTTCAGTCTCTTCGTCTATTGATGGCCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GGTAATAACCATCGGTGTCCTTACACCAGCAATTTCAGTCTCTTCGTCTATTGATGGCCT 713
Query 541 TGTGGCCAAGACAAGTCTGAAGCATAGTACTGTGGTCATGATAGCATGCGCTTTACTGGT 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 714 TGTGGCCAAGACAAGTCTGAAGCACAGTACTGTGGTCATGATAGCATGCGCTTTACTGGT 773
Query 601 TGGACTTTTCGTTCTGCAGCACCGTGGCACCAATAAAGTTGCCTTTCTCTTTGCACCTAT 660
||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 774 TGGACTTTTTGTTCTGCAGCACCGTGGGACAAATAAAGTTGCCTTTCTATTTGCACCTAT 833
Query 661 AATGATTTTGTGGTTGTTGATAATTGCAACTGTTGGTGTGTACAATATTGTGACTTGGAA 720
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 834 AATGATTTTGTGGTTGTTGATAATTGCAACTGCTGGTGTGTACAATATTGTGACTTGGAA 893
Query 721 CCCCAGTGTATACAAAGCCTTATCTCCCTACTACATCTATGTATTCTTTAGAGACACTGG 780
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 894 CCCCAGTGTATACAAAGCCTTATCTCCCTACTATATCTATGTATTCTTTAGAGATACGGG 953
Query 781 AATAGATGGATGGCTATCCCTTGGAGGCATTCTTTTATGCATTACAGGAACGGAGGCTAT 840
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 954 AATAGATGGATGGCTATCCCTTGGAGGCATTCTTTTATGCATCACAGGAACGGAGGCTAT 1013
Query 841 CTTTGCTGAACTTGGCCAATTTACAGCCACATCTATAAGGTTTGCGTTTTGTTGTGTTGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CTTTGCTGAACTTGGCCAATTTACAGCCACATCTATAAGGTTTGCGTTTTGTTGTGTTGT 1073
Query 901 TTACCCGTGTCTGGTGCTTCAATACATGGGCCAAGCTGCGTTTTTATCAAAGAATTTTTC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TTACCCGTGTCTGGTGCTTCAATACATGGGCCAAGCTGCGTTTTTATCAAAGAATTTTTC 1133
Query 961 TGCTCTACCTTCAAGCTTTTATTCTTCCATTCCAGACCCATTTTTCTGGCCGGTTCTCAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TGCTCTACCTTCAAGCTTTTATTCTTCCATTCCAGACCCATTTTTCTGGCCGGTTCTCAT 1193
Query 1021 GATGGCTATGCTGGCTGCAATGGTCGCAAGCCAAGCAGTCATATTTGCCACGTTCTCAAT 1080
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 1194 GATGGCTATGCTAGCTGCAATGGTCGCTAGTCAAGCAGTCATATTTGCCACGTTCTCGAT 1253
Query 1081 TGTCAAACAATGCTATGCATTGGGATGCTTCCCGCGCGTGAAGATTGTTCACAAACCAAG 1140
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1254 TGTCAAACAATGCTATGCATTGGGATGCTTCCCGCGTGTGAAGATTGTTCACAAACCAAG 1313
Query 1141 ATGGGTCCTTGGCCAAATTTACATCCCTGAGATCAATTGGGTTGTCATGATCCTCACCCT 1200
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 ATGGGTCCTTGGCCAGATTTACATCCCTGAGATCAATTGGGTTGTCATGATCCTCACCCT 1373
Query 1201 CACTGTCACCATTTGTTTCCAAGACACTCGACACATAGCTTTTGCTTTTGGGCTCGCCTG 1260
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TGCTGTCACCATTTGTTTCCGAGACACTCGACACATAGCTTTTGCTTTTGGGCTCGCCTG 1433
Query 1261 CATGACTCTAGCCTTTGTGACAACTTGGTTGATGCCTCTCATTATCAACTTTGTCTGGAA 1320
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1434 CATGACTCTAGCCTTTGTGACTACTTGGTTGATGCCTCTCATCATCAACTTTGTCTGGAA 1493
Query 1321 CCGTAATATCGTCTTCTCCGTCCTCTTCATCCTCTTCTTCGGGACCATAGAACTTGTCTT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1494 CCGTAATATCGTCTTCTCCGTCCTCTTCATCCTCTTCTTCGGGACCATAGAACTTATCTT 1553
Query 1381 CGTTGCATCAGCCTTAGTCAAAATTCCTAAAGGAGGCTGGATCACTCTCCTCCTTTCCCT 1440
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1554 CGTTGCATCAGCCTTAGTCAAAATCCCTAAAGGAGGCTGGATCACTCTGCTCCTTTCCCT 1613
Query 1441 CTTCTTCACCTTCATCACATATGTATGGCATTACGGCAGCAGAAAGAAATACCTGTGCGA 1500
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1614 CTTCTTCACCTTCATCACATACGTATGGCATTACGGCAGCAGAAAGAAGTACCTATGCGA 1673
Query 1501 CCAGCACAACAAGGTCCCTATGAAATCAATCCTAAGCCTTGGCCCGAGCCTTGGGATCAT 1560
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1674 CCAGCACAACAAGGTCCCTATGAAATCAATACTAAGCCTTGGCCCGAGCCTCGGGATCAT 1733
Query 1561 CAAAGTCCCTGGGATGGGTCTTATCTACACCGAGCTCGCCAGCGGTGTTCCCGCCACATT 1620
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1734 CAAAGTCCCCGGGATGGGTCTTATCTACACAGAGCTCGCCAGCGGTGTTCCTGCCACATT 1793
Query 1621 TACTCACTTTCTAACAAACTTACCGGCGTTCTACCAAGTTGTCGTCTTTGTCTGCTGCAA 1680
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 TAAGCACTTTCTAACAAACTTACCGGCGTTCTACCAAGTTGTCGTCTTTGTCTGCTGCAA 1853
Query 1681 AACTGTCCCTATCCCGTATGTGCCGCAGAAAGAACGGTACCTTATCGGCCGGATTGGACC 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 AACTGTCCCTATCCCGTATGTGCCGCAGAAAGAACGGTACCTTATCGGCCGGATTGGACC 1913
Query 1741 GAAAACATACAGGATGTACCGATGCATTATCCGAGCCGGTTACAAAGACGTGAACAAAGA 1800
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1914 AAAAACATACAGGATGTACCGATGCATTATCCGAGCTGGCTACAAAGACGTGAACAAAGA 1973
Query 1801 CGGAGATGACTTTGAAGACGAGCTGGTGATGAGCATTGCCGAGTTTATCCAGCTAGAATC 1860
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1974 CGGAGACGACTTTGAAGACGAGCTGGTGATGAGCATCGCCGAGTTTATCCAGCTAGAATC 2033
Query 1861 TGAAGGCTACGGTGGCTCAAACACTGACCGTTCGATTGATGGTCGGCTCGCTGTTGTGAA 1920
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2034 CGAAGGCTATGGTGGCTCAAACACTGACCGTTCGATTGACGGTCGGCTCGCTGTTGTGAA 2093
Query 1921 AGCCTCAAACAAGTTTGGGACAAGGCTGTCTCGGTCTATATCCGAGGCCAACATTGCAGG 1980
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2094 AGCCTCAAACAAGTTTGGGACAAGGCTGTCTCGGTCTATATCCGAAGCCAACATCGCAGG 2153
Query 1981 CAGCTCAAGATCACAGACAACAGTAACAAACAGCAAATCTCCGGCTCTACTTAGACTGAG 2040
|||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2154 CAGCTCGAGATCACAGACAACAGTAACAAACAGCAAGTCTCCGGCTCTACTTAAACTGAG 2213
Query 2041 AGCAGAGTATGAGCAAGAGCTTCCGAGACTGAGCATGAGAAGGATGTTTCAGTTCAGACC 2100
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2214 AGCAGAGTATGAGCAAGAGCTTCCGAGGCTGAGCATGAGAAGGATGTTTCAGTTCAGACC 2273
Query 2101 AATGGACACTAAATTCAGGCAACCACAGGTGAAGGAGGAGCTCTTTGATCTGGTGAACGC 2160
||||||||| || ||||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct 2274 AATGGACACCAAGTTCAGGCAACCGCAGGTGAAGGAAGAGCTGTTTGATCTGGTGAATGC 2333
Query 2161 TAAGGACGCAGAAGTGGCATACATTGTTGGACACGGTCACGTGAAGGCGAAGCGCAACTC 2220
||||||||| |||||||| |||||||| |||||||||||||||||||| ||||| |||||
Sbjct 2334 TAAGGACGCTGAAGTGGCTTACATTGTCGGACACGGTCACGTGAAGGCAAAGCGGAACTC 2393
Query 2221 GGTATTTGTGAAAC-GTTTGGTCATAAACGTGGCTTACTCGTTCTTGAGGAAGAATTGCA 2279
|| ||||| |||| | | ||| ||||||| || ||||||||||||||||||||||||
Sbjct 2394 AGTGTTTGTAAAACAGCT-GGTGGTAAACGTAGCGTACTCGTTCTTGAGGAAGAATTGCC 2452
Query 2280 GAAGCCCAGGCGTGATGTTAAATATTCCTCACATTTGTTTGATCAAAGTGGGCATGAACT 2339
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2453 GGAGCCCAGGCGTGATGTTGAATATTCCTCACATTTGTTTGATCAAAGTGGGCATGAACT 2512
Query 2340 ATTACTTGTAACTGAGAGTTTTT 2362
||||||||||| |||||||||||
Sbjct 2513 ATTACTTGTAAGTGAGAGTTTTT 2535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117720278025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5