BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945750
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23600.1 | Symbols: CORI3, JR2 | Tyrosine transaminase famil... 1978 0.0
AT4G23590.1 | Symbols: | Tyrosine transaminase family protein ... 1020 0.0
> AT4G23600.1 | Symbols: CORI3, JR2 | Tyrosine transaminase family
protein | chr4:12310619-12313212 FORWARD LENGTH=1634
Length=1634
Score = 1978 bits (1071), Expect = 0.0
Identities = 1232/1311 (94%), Gaps = 5/1311 (0%)
Strand=Plus/Plus
Query 1 TAGA-AAGAAAGAAGTAAGAAATGGCAACCCTTAAGTGCATTGACTGGCAATTCAGCGGA 59
|||| || ||| |||| ||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 20 TAGAGAA-AAATAAGT-AGATATGGCAACCCTTAAGTGCATTGATTGGCAATTCAGCGGA 77
Query 60 AGCGAGGCGGCCAAAGAAGCTGCCGGGGCCAGCTTAGGCACATATACCTCTGCACTCTAT 119
||||||||||||||||| ||||| | |||| ||||||| ||||||||||||||||||||
Sbjct 78 AGCGAGGCGGCCAAAGATGCTGCTGCGGCCTCCTTAGGCTCATATACCTCTGCACTCTAT 137
Query 120 GCTATGTGCGATCCTAATGGCAAACCCATTTTGCCCCCACGAAATGAGATCCTGGAGACC 179
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GCCCTGTGCGATCCTCATGGCAAACCCATTTTGCCCCCACGAAATGAGATCCTGGAGACC 197
Query 180 AGCAATACAGCCGAAAAAGCAGTTGTTAAAGCCGTTCTTTATGGCACGGGAAACGCCTAT 239
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 198 AGCAATACAGCCGAAAAAGCAGTTGTTAAAGCTGTTCTTTATGGCTCGGGAAACGCCTAT 257
Query 240 GCTCCTAGCGTT-GGCCTCGCGGCCGCCAAACGTGCTGTAGCAGAGTATCTAAACCAAGG 298
||||||||| || |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 258 GCTCCTAGC-TTAGGCCTCGCGGCCGCCAAAAGTGCCGTAGCAGAGTATCTAAACCAAGG 316
Query 299 TCTTCCAAAGAAGCTTACAGCAGATGACGTGTTTATGACTCTTGGATGCAAACAAGCCAT 358
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 317 TCTTCCAAAGAAGCTTACCGCAGATGACGTGTTTATGACTCTGGGATGCAAACAAGCTAT 376
Query 359 TGAGCTCGCAGTAGACATTCTGGCTAAACCGAAAGCCAACGTTTTGCTTCCGAGTCCTGG 418
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 377 TGAGCTCGCGGTAGACATTCTCGCTAAACCGAAAGCCAACGTTTTGCTTCCGAGTCCCGG 436
Query 419 CTTCCCATGGGACGTAGTCCGCTCCATCTACAGGAACCTTGAGGTCCGCCACTATGATTT 478
||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 437 CTTCCCATGGGACCTAGTCCGCTCCATCTACAAGAACCTTGAGGTCCGCCACTATAATTT 496
Query 479 CCTTCCCCAAAAGAACTTTGAGATCGACTTTGATAGCGTCCGAGCGCTCGTGGACGAGAA 538
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 497 CCTTCCAGAAAAGAACTTTGAAATCGACTTTGATAGCGTCCGAGCGCTCGTGGACGAGAA 556
Query 539 CACGTTTGCGATATTTATAATCAACCCCCACAATCCCAATGGGAACACCTACTCCGAGGC 598
||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 557 CACATTTGCCATATTTATAATCAACCCCCACAACCCCAATGGTAACACCTACTCCGAGGC 616
Query 599 TCATCTCAAACAGCTCGCTGAATTGGCTAAGGAACTCAAGATCATGGTGGTTTCTGACGA 658
||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 617 TCATCTCAAACAGCTGGCTGAACTGGCTAAGGAACTCAAGATTATGGTGGTTTCTGACGA 676
Query 659 GGTTTTTAGATGGACACTCTTTGGGAGTAACCCTTTTGTTCCGATGGGAAAATTCTCATC 718
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 677 GGTTTTTAGATGGACACTCTTTGGTAGTAACCCTTTTGTTCCTATGGGAAAATTCTCGTC 736
Query 719 GATCGTACCAGTGGTTACACTTGGATCCATATCAAAGGGATGGAAAGTTCCAGGATGGCG 778
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 737 GATCGTACCAGTGGTTACACTCGGATCCATATCAAAGGGATGGAAAGTCCCAGGATGGCG 796
Query 779 AACTGGCTGGCTCGCGCTGCATGATCTAGATGGTGTCTTCAGAAACACCAAGGTCTTACA 838
|||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 797 AACTGGTTGGCTCACGCTACATGATCTAGACGGTGTCTTCAGAAACACCAAGGTCTTACA 856
Query 839 AGCTGCACAAGAATATCTCCAGATAAACAATAATCCTCCGACTGTTATCCAGGCGGCTAT 898
|||||| ||||| | |||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 857 AGCTGCTCAAGATTTTCTCCAGATAAACAATAACCCTCCGACAGTTATCCAGGCGGCTAT 916
Query 899 TCCTGACATCTTGGAGAAAACTCCTAAAGACTTCTTCGATAAGAGGCAAAGTTTTCTGAA 958
||||||||||||||||||||||||| |||| || || ||||||||||| |||||||||||
Sbjct 917 TCCTGACATCTTGGAGAAAACTCCTCAAGAGTTTTTTGATAAGAGGCAGAGTTTTCTGAA 976
Query 959 AGACAAAGTAGAATTTGGTTATTCTAAGCTCAAGCACATACCTAGCCTCACTTGCTACAT 1018
||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 977 AGATAAAGTAGAATTTGGTTATTCTAAGCTCAAGTACATTCCTAGCCTCACTTGCTACAT 1036
Query 1019 GAAACCTGAAGCGTGCACCTTCTTATGGACCGAGCTTGATTTATCGAGCTTTGTGGACAT 1078
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GAAACCCGAAGCCTGCACCTTCTTATGGACCGAGCTTGATTTATCGAGCTTTGTGGACAT 1096
Query 1079 CGAAGATGATCAAGACTTTTGCAATAAGCTTGCTATAGAAGAAAACCTCGTCGTTTTACC 1138
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1097 CGAAGACGATCAAGACTTTTGCAATAAGCTTGCTAAAGAAGAAAACCTCGTCGTTTTACC 1156
Query 1139 AGGGATTGCATTTAGTCAGAAGAACTGGTTGAGGCATTCTATCGATATGGAGACTCCGAT 1198
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1157 AGGGATTGCATTCAGTCAGAAGAACTGGTTGAGGCATTCTATCGATATGGAGACTCCGGT 1216
Query 1199 ATTGGAGGATGCAATGGAAAGATTGAAGAGCTTCTGTGATCGCCATTCCATTAAAGAAGC 1258
||||||||||||| |||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct 1217 ATTGGAGGATGCATTGGAAAGATTGAAGAGCTTCTGCGATCGCCATTCCAACAAAAAAGC 1276
Query 1259 TCCACTCAAAGACGTCAATGGTGTCAACTAAAGGGTCAATACGGATCTTTG 1309
||| |||||||||||||||||||| || ||||||||||||| || | ||||
Sbjct 1277 TCCCCTCAAAGACGTCAATGGTGTTAAGTAAAGGGTCAATATGGTTATTTG 1327
> AT4G23590.1 | Symbols: | Tyrosine transaminase family protein
| chr4:12307126-12309647 FORWARD LENGTH=1546
Length=1546
Score = 1020 bits (552), Expect = 0.0
Identities = 994/1203 (83%), Gaps = 48/1203 (4%)
Strand=Plus/Plus
Query 124 TGTGCGATCCT-AATGGCAAA-CCCATTTTGCCCCCACGAAATG-AGATCCTGGAGACCA 180
|||| || ||| || || ||| || |||||||| |||| || || ||| | |||||||
Sbjct 173 TGTGTGACCCTCAA-GG-AAAGCCTATTTTGCCTCCACTAAGTGAAGAGGC-AGAGACCA 229
Query 181 GCAATACAGCCGAAAAAGCAGTTGTTAAAGCCGTTCTTTATGGCACGGGAAACGCCTATG 240
|| |||| |||||||| || |||||||| || || |||| || ||||||||||||||||
Sbjct 230 GCCATACCGCCGAAAAGGCGGTTGTTAAGGCTGTCCTTTGCGGTACGGGAAACGCCTATG 289
Query 241 CTCCTAGCGTTGGCCTCGCGGCCGCCAAACGTGCTGTAGCAGAGTATCTAAACCAAGGTC 300
|||| || |||||||| ||| |||||||||||||| || || |||||||||| || ||
Sbjct 290 CTCCAAGTATTGGCCTCCCGGTTGCCAAACGTGCTGTGGCGGAATATCTAAACCGAGATC 349
Query 301 TTCCA-AAGAAGCTTACAGCAGATGACGTGTTTATGACTCTTGGATGCAAACAAGCCATT 359
|| | || ||||| || | ||||||||| | ||||||| |||||||||||||||| ||
Sbjct 350 TT-GACAATAAGCTAACGGGAGATGACGTATATATGACTGTTGGATGCAAACAAGCAATC 408
Query 360 GAGCTCGCAG-TAGACATTCTGGCTAAACCGAAAGCCAACGTTTTGCTTCCGAGTCCTGG 418
|||||||| | ||| |||||||||||||||||||||||| | ||||||||||| || ||
Sbjct 409 GAGCTCGCGGTTAG-TATTCTGGCTAAACCGAAAGCCAACATCTTGCTTCCGAGGCCAGG 467
Query 419 CTTCCCATGGGACGTAGTCCGCTCCATCTACAGGA-ACCTTGAGGTCCGCCA-CTATGAT 476
||||||||||||| | |||| ||| ||||||| | ||||||||||||| | |||||
Sbjct 468 CTTCCCATGGGACATGGTCCACTCTATCTACA-AACACCTTGAGGTCCG-AAGGTATGAG 525
Query 477 TTCCTTCCCCAAAAGA-ACTTTGAGATCGACTTT-GATAGCGTCCGAGCGCTCGTGGACG 534
|| | |||| ||||| ||||||||||||| ||| | ||||| ||| | | || ||||
Sbjct 526 TT-CATCCCTGAAAGAGACTTTGAGATCGA-TTTCAACAGCGTTAGAGAGATGGTAGACG 583
Query 535 AGAACACGTTTGCGATATTTATAATCAACCCCCACAATCCCAATGGGAAC-ACCTACTCC 593
||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 584 AGAACACTTTTGCGATATTTATAATCAACCCCCACAATCCCAATGGGAACTAC-TACACT 642
Query 594 GAGGCTCATCTCAAACAGCTCGCTGA-ATTGGCTAAGG-AACTCAAGATCATGGTGGTTT 651
||||||||||| || ||||||||| | |||||| | || ||||| ||| ||||| ||||
Sbjct 643 GAGGCTCATCTTAAGCAGCTCGCT-ACATTGGC-ACGGGAACTCGGGATAATGGTCGTTT 700
Query 652 CTGACGAGGTTTTTAGATGGACAC-TCTTTGGGAGTAACCCTTTTGTTCCGATGGGAAAA 710
| || || || | ||||||| | | | || |||||||| || |||||||| ||||| |||
Sbjct 701 CGGATGAAGTATATAGATGGTC-CGTATTCGGGAGTAATCCATTTGTTCCAATGGGGAAA 759
Query 711 TTCTCATCGATCGTACCAGTGGTTACACTTGGATCCATATC-AAAGGGATGGAAAGTTCC 769
||||| ||||| ||||||||| ||||||| || |||||||| ||||| ||||| || ||
Sbjct 760 TTCTCCTCGATAGTACCAGTGATTACACTCGGGTCCATATCGAAAGG-ATGGATTGTCCC 818
Query 770 AGGATGGCGAACTGGCTGGCTCGCGCTGCATGATCTAGATGGTGTCTTCAGAAACACCAA 829
|||||||||||| |||||||||||| | || |||||| |||||||||| ||| ||| ||
Sbjct 819 AGGATGGCGAACGGGCTGGCTCGCGTTACACGATCTAAATGGTGTCTTTAGATCCACAAA 878
Query 830 GGTCTTACAAGCTGC-ACAAGAATATCTCCAGATAAA--CAATAATCCTCCGACTGTTAT 886
||||||| ||||||| | |||||| ||| |||| | | | || || || ||||| ||
Sbjct 879 GGTCTTAAAAGCTGCGA-AAGAATTTCTGGAGATTACTTCCA-AA-CCACCAACTGTCAT 935
Query 887 CCAGGCGGCTATTCCTGACA-TCTTGGAGAAAACTCCTAAAGACTTCTTCGATAAGAGGC 945
||||||||||||||| ||| ||||||||||||||||| |||| || ||||| ||||||
Sbjct 936 CCAGGCGGCTATTCCC-ACAATCTTGGAGAAAACTCCTCAAGATTTTTTCGAGAAGAGGG 994
Query 946 AAAGTTTTCTGAAAGACAAAGTAGAATTTGGTTATTCTAAGCTCAAGCACATACCTAGC- 1004
| |||||| ||||||||||| || ||||| ||||||||||||||| ||||||| | |
Sbjct 995 GGATTTTTCTAAAAGACAAAGTGGATTTTGGATATTCTAAGCTCAAGAACATACCAA-CT 1053
Query 1005 CTCACTTGCTACATGAAACCTGAAGCGTGCACCTTCTTATGGACCGAGCTTGATTTATCG 1064
||||| |||||||||||||||||| | |||||||||||||||||| |||| || || |
Sbjct 1054 CTCACCTGCTACATGAAACCTGAATCATGCACCTTCTTATGGACCAAGCTGGACCCATTG 1113
Query 1065 -AGCTTTGTGGACATCGAAGATGATCAAGACTTTTGCAATAAGCTTGCTATAG-AAGAAA 1122
| ||||| ||||| ||||| ||||| ||||| |||| |||||||||| || ||||||
Sbjct 1114 CAT-TTTGTAGACATTGAAGACGATCACGACTTCTGCAGGAAGCTTGCTA-AGGAAGAAA 1171
Query 1123 ACCTCGTCGTTTTACCAGGGATTGCATTTAGTCAGAAGAACTGGTTGAGGCATTCTATCG 1182
| ||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1172 ATCTCGTTGTTTTACCAGGAATTGCATTTGGTCAGAATAACTGGTTGAGGCATTCTATCG 1231
Query 1183 ATATGGAGACTCCGATATTGGAGGATGCAATGGAAAGATTGAAGAGCTTCTGTGATCGCC 1242
| ||||||||||| | ||||||||||||| | |||||||| |||||||||||||| ||||
Sbjct 1232 ACATGGAGACTCCAAGATTGGAGGATGCATTTGAAAGATTAAAGAGCTTCTGTGAACGCC 1291
Query 1243 ATTCCATTAAAG---AAGCT-C--CACTCAAAGACGTCAATGGTGTCAACTAAAGGGTCA 1296
||||| ||| || ||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 1292 ATTCCGTTATAGTTGAAGCTTCTTCACTCAAAGACGTCAATGGCGTCAACTAAAGGGTCA 1351
Query 1297 ATA 1299
|||
Sbjct 1352 ATA 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64407299235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5