BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945757
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23530.1 | Symbols: | Protein of unknown function (DUF793) ... 1917 0.0
> AT4G23530.1 | Symbols: | Protein of unknown function (DUF793)
| chr4:12279075-12280851 FORWARD LENGTH=1777
Length=1777
Score = 1917 bits (1038), Expect = 0.0
Identities = 1174/1238 (95%), Gaps = 15/1238 (1%)
Strand=Plus/Plus
Query 7 CACATTACACTCTAATGGCTCGCCCGACGGAATTTCAAGGCTCATTCCTGAGTCGAATCA 66
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 83 CACACTACACTCTAATGGCTCGTGCGACGGAATTTCAAGGCTCATTCCTGAGTCGAATCA 142
Query 67 GCATCCGCCGCAATCAGATCGTCTCCATGGACGTCAATCACGAGCACGAGCTCGAAGAAC 126
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 143 GCATCCGCCGTAATCAGATCGTCTCCATGGATGTCAATCACGAGCAAGAGCTCGAAGAAC 202
Query 127 TCGAGTATTTCCAGAAACACGTAGCTGAGCGTTTCTCGGAGTTAATAACATCTCCATCGC 186
||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| |
Sbjct 203 TCGAGTATTTCCAGAAACACGTAGCCGAACGTTTCTCGGATTTAATCACATCTCCATCTC 262
Query 187 CGCATCATtcctcctcctcctcctcTGACGCCGCCGCCGTCTCTCACCCGTCTGATCCGA 246
||| | |||| |||||||||||| ||||||||||||| |||||||||||||
Sbjct 263 CGC--C--TCCT--TCCTCCTCCTCT------TCCGCCGTCTCTCAGCCGTCTGATCCGA 310
Query 247 TTCTCTCGATCCCTTGGTTACAGAATCTTCTAGATGTTTTTATGTCCTGTGAAGCTGAGT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 311 TTCTCTCGATCCCTTGGTTACAGAATCTTCTAGATGTTTTTATGTCCTGTGAAGCAGAGT 370
Query 307 TCAAGGCGGTGTTAAGCACGACCCAGATCTCGAAATCGCCGTCTTTAGAAAGGGTTTTGC 366
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCAAGGCGGTGTTGAGCACGACCCAGATCTCGAAATCGCCGTCTTTAGAAAGGGTTTTGC 430
Query 367 CGGAAATGCTTGATCGGATTTTAAAGGCGTTGGATTTATGTAACGCCGTCGTTAACGGGA 426
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 431 CGGAAATGCTTGATCGGATTTTAAAGGCGTTAGATTTATGTAACGCCGTCGTTAACGGGA 490
Query 427 TTGATTTCGTTAGACAGAGTCGACGTTTAGCGGAGATAGCTGTTACGGCGCTTAAGCAAC 486
|||||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 491 TTGATTCCGTTAGACAGAGCCGACGTTTTGCGGAGATAGCTGTCACGGCGCTTAAGCAAC 550
Query 487 GGCCGTTATGTGACGGAAGCGTTCGTAGAGCTAAGCGTGCGTTAACAAGTCTCCTCATTG 546
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 551 GGCCGTTATGTGACGGAAGCGTTCGTAGAGCTAAGCGTGCTTTAACAAGTCTCCTCATTG 610
Query 547 GCTTAAACGCTGATGAGAGGAGAGATAGAAACAGTGGAGGAAGTGGTTGCAGTAATCAAC 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 611 GCTTAAACGCTGATGAGAGGAGAGATAGAAACAGTGGAGGAAGTGGTTGCAGTAACCAAA 670
Query 607 GAAGGACTACGTCACGGTCTTGGTCGTTTGGAACGCGTAGCAACGTCACCGGAGGAGGAT 666
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 671 GAAGGACGACGTCACGGTCTTGGTCGTTTGGAACGCGTAGCAATGTCACCGGAGGAGGAT 730
Query 667 CATATGGCCAGGTCGTCAGCAAGAATTGGTCTGCGACGAAGCAGATTCAGGCGATGGTGG 726
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 731 TATATGGCCAAGTCGTCAGCAAGAATTGGTCTGCTTCGAAGCAGATTCAGGCGATGGTGG 790
Query 727 CCAATCTGGTGCTGCCACGTGGAGCTGAAGCTTCTGGACCGGTGATGCCTGTTTATATAA 786
|||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||
Sbjct 791 CCAATCTGGTGCTGCCACGTGGAGCTGAAGCTTCCGGACCGGCAATGCCGGTTTACATAA 850
Query 787 TGAGCAGTGTTATGGTTCTGGTGATGTGGGTGCTAGTGGCGGCGGTTCCTTGTCAGACAA 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TGAGCAGTGTTATGGTTCTGGTGATGTGGGTGCTAGTGGCGGCGGTTCCTTGTCAGACAA 910
Query 847 GCAGCGTTCTTGTGGCGCCATTGCCACTTCCGAAACACCAGAGTTGGGCTAGCGCCGCTG 906
|||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||||
Sbjct 911 GCAGTGTTCTTGTGGCGCCATTGCCGCTTCCAAAACACCAGAATTGGGCTAGCGCCGCTA 970
Query 907 TGAATATTCAGGAGAGGATTGGTGAAGAGATGAAACGGAAGGAGAAGCGTTGTGGTGGTG 966
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 971 TGAGTATTCAGGAGAGGATTGGTGAAGAGATAAAACGGAAGGAGAAGCGTTGTGGTGGTG 1030
Query 967 GTGGATTGATGGAGGAGATGCAGAGGATGGAGAAGATTGGGTTATCTTTAATGGAATTCG 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 GTGGATTGATGGAGGAGATGCAGAGGATGGAGAAGATTGGGTTATCTTTAATGGAATTCG 1090
Query 1027 CGGAGAGGTTTAGGTATCCGGCAGATGAAGAAGAGGAGGTGGAAGTTGCGGAAAAGGTGG 1086
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1091 CGGAGAGGTTTAGGTTTCCGGCAGATGAAGAAGAGGAGGTGGAAGTTGCGGAGAAGGTGG 1150
Query 1087 ATGAGATGGAGGAGATTTGCCGGGGAATGGAAGTAGGATTGGAGGATTTGCAGAGACAAG 1146
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1151 ATGAGATGGAGGAGATTTGCCGGCGAATGGAAGTGGGATTGGAGGATTTGCAGAGACAAG 1210
Query 1147 TGAGGCAAGTGTTCCATAGATTGGTGAGAAGCAGGATTGAAATTGTTTCAGTCCTTGATC 1206
|||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |
Sbjct 1211 TGAGGCAAGTGTTCCATAGATTGGTGAGAAGCAGGATTGAGATTGTTTCACTGCTTGAGC 1270
Query 1207 AAGCTCCTGCAATCTAATCT-GTAAAAATCCTCAATAA 1243
|||||||||||||||||||| ||||| ||||||||||
Sbjct 1271 AAGCTCCTGCAATCTAATCTTGTAAA--TCCTCAATAA 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61094063265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5