BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945769

Length=509
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G23450.2 | Symbols: AIRP1, AtAIRP1 | RING/U-box superfamily ...   749    0.0  


> AT4G23450.2 | Symbols: AIRP1, AtAIRP1 | RING/U-box superfamily 
protein | chr4:12240804-12242706 REVERSE LENGTH=1327
Length=1327

 Score =  749 bits (405),  Expect = 0.0
 Identities = 475/509 (93%), Gaps = 4/509 (1%)
 Strand=Plus/Plus

Query  3     ACTCTATTATACCAAAGAATGGGTTGCTGCTGTTGTCTCCCGAGTATACCCGAAAGCTCA  62
             ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  539   ACTTTATCATACCAAAGAATGGGTTGCTGCTGTTGTCTCCCGAGTATACCCGAAAGCTCA  598

Query  63    AGAACTATAGATGAGCATGTTCCCTTATCTCGTGC-ACCACCTTCCTCTCTCTCAAATGC  121
             |||||||||||||||||| |||||||||||||||| ||  |||||||||||||| |||||
Sbjct  599   AGAACTATAGATGAGCATCTTCCCTTATCTCGTGCCACG-CCTTCCTCTCTCTCTAATGC  657

Query  122   ATACACTTCGCCACTTTCGCCGCCTATTCCTTTAGCCTTTACCAATAGAAATCTTCAAAC  181
             ||||| ||| || |||||||||||||||||||||||| | || |||| ||||||||||||
Sbjct  658   ATACAGTTCACCTCTTTCGCCGCCTATTCCTTTAGCCATCACGAATATAAATCTTCAAAC  717

Query  182   TAGTCCACCGAAATTGCCAAGAACTCAGAGCAATTCGAGCGAAGCATCCCCGGGACTCAC  241
             |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct  718   TAGTCCACCGAAATTGCCAAGAACTCAGGGCAATTCGAGTGAAGCATCCCCGGGACTCAC  777

Query  242   TCAAGTTGTTCCAGAGAAGGAAACATGGCATGTTGATGATCTAACTGATTTTGAGCTAAA  301
              |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  778   ACAAGTTGTTCCAGAGAAGAAAACATGGCATGTTGATGATCTAACTGATTTTGAGCTAAA  837

Query  302   GAAACAGTATCGAGAAGCCATCGATGAATGTCCAATTTGCTTAGAAGAATATGAGATTGA  361
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  838   GAAACAGTATCGAGAAGCAATCGATGAATGTCCAATTTGCTTAGAAGAATATGAGATTGA  897

Query  362   GAACCCGAAATTGCTCACTAAATGTGGCCATGA-TTTCCATCTCGCGTGCATTCTTGAAT  420
              |||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||
Sbjct  898   TAACCCGAAATTGCTCACTAAATGTGGCCATGACTTTC-ATCTCGCTTGCATTCTTGCAT  956

Query  421   GGATGGAAAGAAGCGAAGCGTGTCCAGTTTGCGACAAGGAAATAGCAATCACTGAATCGC  480
             |||||||||||||||| ||||||||||||||||| |||||| |||   ||||||||||  
Sbjct  957   GGATGGAAAGAAGCGAGGCGTGTCCAGTTTGCGATAAGGAATTAGTGCTCACTGAATCAT  1016

Query  481   AATCGTAAACAAGAAACCGATAGCTCGGA  509
             |||||| ||||||||||| ||||||||||
Sbjct  1017  AATCGTGAACAAGAAACCAATAGCTCGGA  1045



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24313327148


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5