BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945773
Length=886
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23410.1 | Symbols: TET5 | tetraspanin5 | chr4:12223953-1222... 1391 0.0
> AT4G23410.1 | Symbols: TET5 | tetraspanin5 | chr4:12223953-12225323
FORWARD LENGTH=1104
Length=1104
Score = 1391 bits (753), Expect = 0.0
Identities = 844/888 (95%), Gaps = 6/888 (1%)
Strand=Plus/Plus
Query 3 AAAA-GAGAGAGAAGGAAAATGAACAGAATGAGCAATACAGTGATAGGATTCTTGAATAT 61
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 AAAAGGAGAGAGAAGGAAAATGAACAGAATGAGCAATACAGTGATAGGATTCTTGAATAT 182
Query 62 CCTAACACTAATTTCCTCCATAGTGT-TATTAGGATCAGCTCTATGGATGGGTAAGAGCA 120
|||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||
Sbjct 183 CCTAACACTAATTTCCTCCATAGT-TCTATTAGGATCAGCTCTATGGATGGGTAGGAGCA 241
Query 121 AGACAACATGCGAGCATTTTCTTCAGAAGCCACTTTTGATCTTAGGCCTAGCTATCTTGG 180
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AAACGACATGCGAGCATTTTCTTCAGAAGCCACTTTTGATCTTAGGCCTAGCTATCTTGA 301
Query 181 TCTTGTCAATAGCTGGTCTAGTCGGTGCATGTTGTGACGTGGCTTGGGTCTTGTGGGTGT 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TCTTGTCAGTAGCTGGTCTAGTCGGTGCATGTTGTGACGTGGCTTGGGTCTTGTGGGTGT 361
Query 241 ACCTCTTCTTCATGGTCTTCATCATAGTCGCGCTCATGGGTTTGACCTTGTTTGGGTTCA 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 362 ACCTCTTCTTCATGGTCTTCATCATAGTCGCACTCATGGGTTTGACCTTGTTTGGATTCA 421
Query 301 TAGTGACTAGCCATGGTGGTGGTGTGGGTGTGGATGGTAGGGTTTATAAAGAGTTTAAGC 360
|||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 422 TAGTGACTAGCCATAGTGGTGGTGTGGTTGTCGATGGTAGGGTTTATAAAGAGTTTAAGC 481
Query 361 TTGAAGCATATCACCCTTGGCTTAAGACAAGAGTGGTAGATACTAATTATTGGGTTACTA 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 482 TTGAAGCATATCACCCTTGGCTTAAGACAAGGGTGGTAGATACTAATTATTGGGTTACTA 541
Query 421 TAAAGACTTGTCTATTGGGCTCTGTCACTTGTTCCAAACTCGCTCTTTGGACTCCTCTTG 480
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 542 TAAAGACTTGTCTCTTGGGCTCAGTCACTTGTTCCAAGCTCGCTCTTTGGACTCCTCTTG 601
Query 481 ATTATCTCCAAAAGGACTTATCTCCTCTTCAGTCTGGATGCTGCAAACCACCGACGTCAT 540
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 602 ATTATCTCCAAAAAGACTTATCTCCTCTTCAGTCTGGATGCTGCAAACCACCGACGTCGT 661
Query 541 GCGTTTACAACACGGACACGGTGATACAACAAGACCCTGATTGTTACCGGTGGAGCAACG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 662 GCGTTTACAACACGGACACGGTGATACAACAAGACCCTGATTGTTACCGGTGGAACAACG 721
Query 601 CTGCGACAGTGCTTTGCTACGATTGTGACTCGTGTAGAGCTGGCGTTTTAGAGACCGTGC 660
| ||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||| || |
Sbjct 722 CAGCGACGGTGCTCTGCTATGATTGTGACACGTGTAGAGCTGGCGTTTTAGAGACTGTAC 781
Query 661 GTCGCGATTGGCACAAACTATCTCTAGTTAACGTCGTCGTTGTTCTTTTCCTCATCGCGG 720
||||||||||||||||||| |||||||| |||||| | |||||| |||||||||| || |
Sbjct 782 GTCGCGATTGGCACAAACTCTCTCTAGTGAACGTCATTGTTGTTATTTTCCTCATAGCTG 841
Query 721 TTTACTGCGTTGGCTGTTGCGCGTTTAAAAACGCCAAACGCCCTCAACATTACGGCTTTC 780
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 842 TTTACTGTGTTGGCTGTTGCGCGTTTAAAAACGCCAAACGCCCTCAACATTACGGCTTCC 901
Query 781 CTTACGGACGTTACGGCATGTCCAAATCTC-GACCCGGATGGGAACAGTCCTGGTCGAGA 839
|||| ||||||||||||||||||||||| | |||| |||||||||||||||||||| ||
Sbjct 902 CTTATGGACGTTACGGCATGTCCAAATC-CAGACCTGGATGGGAACAGTCCTGGTCAAGG 960
Query 840 TGGTGGCATGGGAGAGATCGGTATTAGTGAAAAATATGTATGT-AATG 886
||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 961 TGGTGGCATGGGAGAGATCGGTATTAGTGAAAAATATTTATGTTAATG 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43251600567
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5