BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945803

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G23110.1 | Symbols:  | insulin-like growth factor binding | ...   433    9e-121


> AT4G23110.1 | Symbols:  | insulin-like growth factor binding 
| chr4:12110857-12111570 FORWARD LENGTH=714
Length=714

 Score =  433 bits (234),  Expect = 9e-121
 Identities = 436/526 (83%), Gaps = 44/526 (8%)
 Strand=Plus/Plus

Query  1    TCTTTCAGGTTTGCAAGTT-C-AATGAGGAACAAATCTCAGCCGTCAAGATTATCACCAG  58
            ||||||||||||||||||| | |||| |||| |||||| ||||||  | ||||||| |||
Sbjct  65   TCTTTCAGGTTTGCAAGTTCCAAATGGGGAAAAAATCTAAGCCGTTTATATTATCATCAG  124

Query  59   ATG-AGGCTTCTCCCCTTCCCCA-GCAGCCTTGCAAAGCTCTTCCGATAAGAGGTCAGTC  116
            ||| |  ||   |||| | |  | |||||||| ||||||||||| |||||| | ||||||
Sbjct  125  ATGCA-CCTAAGCCCCCT-CATAGGCAGCCTTACAAAGCTCTTCTGATAAGCGCTCAGTC  182

Query  117  ATCTAAAGTGAAGTC-ACGAGATGGTGAAGCAACTGGTTCGCAAATGAAGCCGTCGAAAA  175
            |||||||||||| || || |||||||||||||||||||||||||||||||||| || |||
Sbjct  183  ATCTAAAGTGAATTCAAC-AGATGGTGAAGCAACTGGTTCGCAAATGAAGCCG-CGGAAA  240

Query  176  C-CAGAAAAGCCCCTTACAAAGCTCTTCTCATTAGAGCTCGGTCACCAC-ATTCAAGTGA  233
            |  |||||||||||||||||||||||||||||||||||||| ||||||  | | ||||||
Sbjct  241  CAAAGAAAAGCCCCTTACAAAGCTCTTCTCATTAGAGCTCGATCACCAGGACT-AAGTGA  299

Query  234  CGAATAT-TCATCGGAGAGTGAATCTTCGTCCGATGAATTTTCCTATGAAGCGGATGGTG  292
             ||| |  || |||||||||||  |||  |    |       |||||||||||||| |||
Sbjct  300  GGAA-AGCTCTTCGGAGAGTGA--CTT--T----T-------CCTATGAAGCGGATTGTG  343

Query  293  AAGCATCCGATTCATCATCAGCGGATAGTGATGCAACCGATGTGAAGCCGATGAAGAACA  352
            ||||||||||||||||||||||||| ||||| |||||| || ||||||||||||||||||
Sbjct  344  AAGCATCCGATTCATCATCAGCGGAGAGTGAAGCAACCAATATGAAGCCGATGAAGAACA  403

Query  353  AAACTGCGAGAAAAGCTCCAATATCGCAAGAACCAGAAGCGGGGATGGAAATCGAAGAGC  412
            ||||||||||||||||||||     | |||  | ||  ||  | | | | |   ||||||
Sbjct  404  AAACTGCGAGAAAAGCTCCA-----G-AAG--CGAG--GCTAGCA-G-ACA---AAGAGC  448

Query  413  CAAACAAGAGGAGAAGGATCTCAGAGAAGGACGATGATTCTGAAGATACCATGTCCTGGG  472
             |||||||||||||||||||||||||||| || || || ||||||| |||||||||||||
Sbjct  449  AAAACAAGAGGAGAAGGATCTCAGAGAAGAACAATAATCCTGAAGAAACCATGTCCTGGG  508

Query  473  AACCAGAAGTTAAGAAGACTCCTTGAAAGAAAATTTCGACAGAAGA  518
            ||||||||||||| ||||||| ||||||||| ||||||||||||||
Sbjct  509  AACCAGAAGTTAAAAAGACTCTTTGAAAGAAGATTTCGACAGAAGA  554



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24765434471


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5