BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945828
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22910.1 | Symbols: FZR2, CCS52A1 | FIZZY-related 2 | chr4:1... 2252 0.0
AT4G11920.1 | Symbols: CCS52A2, FZR1 | cell cycle switch protei... 1144 0.0
> AT4G22910.1 | Symbols: FZR2, CCS52A1 | FIZZY-related 2 | chr4:12012677-12016011
FORWARD LENGTH=1866
Length=1866
Score = 2252 bits (1219), Expect = 0.0
Identities = 1408/1494 (94%), Gaps = 34/1494 (2%)
Strand=Plus/Plus
Query 1 GAGTCAAC--aaaaaaaaaaCC-ATGGAAGAAGAAGATCCTAGC-GCAAGCAATGTGATA 56
|||||||| |||||||||||| ||||||||||||||||||| | |||||||||||||||
Sbjct 44 GAGTCAACAAAAAAAAAAAACCAATGGAAGAAGAAGATCCTA-CAGCAAGCAATGTGATA 102
Query 57 ACGAATTCGAATTCTTCATCACA-GAGAAATCTATCGCCGTCGATGAATACTCCGGTGGT 115
|||||||||||||||||||| | |||||| ||||||||| |||||||||||||||||||
Sbjct 103 ACGAATTCGAATTCTTCATC-TATGAGAAACCTATCGCCGGCGATGAATACTCCGGTGGT 161
Query 116 TTCACTTGAGTCACGAATCAATCGATTAATCAATGC---T-AA--TCAAT---C-TCA-- 163
|||||||||||||||||||||||||||||||||||| | || ||||| | |||
Sbjct 162 TTCACTTGAGTCACGAATCAATCGATTAATCAATGCTAATCAATCTCAATCACCATCACC 221
Query 164 ATCA-C-C-ATCAAGGTCTATATACTCTGATAGATTTATTCCCAGTAGATCCGGATCCAA 220
|||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 222 ATCATCACTATCAAGGTCTATATACTCTGATAGATTTATCCCCAGTAGATCCGGATCCAA 281
Query 221 TTTCGCTCTCTTCGATCTATCTCCTTCTCCGAGTAAAGATGGTAAGGAAGATGGAGCTGG 280
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 282 TTTCGCTCTTTTCGATCTATCTCCTTCTCCTAGTAAAGATGGTAAGGAAGATGGAGCTGG 341
Query 281 CTCTTACGCTACTCTGTTGCGTGCGGCCATGTTTGGACCAGAGACGCCGGAGAAGAGAGA 340
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 342 CTCTTACGCTACTCTGTTGCGTGCGGCGATGTTTGGTCCTGAGACGCCGGAGAAGAGAGA 401
Query 341 TATTACTGGGTTCTCTTCTTCCAGGAATATTTTCAGGTTTAAGACGGAGACGCATCGGTC 400
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 402 TATTACTGGGTTTTCTTCTTCCAGGAATATTTTTAGGTTTAAGACGGAGACTCATCGGTC 461
Query 401 TTTGAATTCTTTTTCTCCTTTTGGTG-T--TGATGATTCTCCTGGTGTTTGTCATA---G 454
||||||||| |||||||||||||||| | |||||||||||||||||||| ||||| |
Sbjct 462 TTTGAATTCGTTTTCTCCTTTTGGTGTTGATGATGATTCTCCTGGTGTTTCTCATAGTGG 521
Query 455 TCCTGTTAAAGCTCCCAGGAAAGTGCCGCGATCGCCGTATAAAGTATTGGATGCACCGGC 514
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 522 TCCTGTTAAAGCTCCCAGGAAAGTGCCGCGATCGCCGTATAAGGTATTGGATGCACCGGC 581
Query 515 CTTGCAAGATGATTTTTATCTGAATCTCGTGGATTGGTCTGCACAAAATGTTCTTGCAGT 574
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 582 CTTGCAAGATGATTTTTATCTGAATCTTGTGGATTGGTCTGCACAAAATGTTCTAGCAGT 641
Query 575 GGGATTAGGGAACTGCGTTTATTTATGGAATGCTTGTAGCAGCAAGGTAACTAAGTTATG 634
|||| |||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 642 GGGACTAGGGAACTGTGTGTATTTATGGAATGCTTGTAGCAGCAAGGTTACTAAGTTATG 701
Query 635 TGATCTTGGAGCTGAGGATAGTGTTTGCTCTGTGGGTTGGGCGTTACGTGGAACTCATCT 694
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 702 TGATCTCGGAGCTGAGGATAGTGTTTGCTCAGTGGGTTGGGCGTTACGTGGAACTCATCT 761
Query 695 GGCTGTTGGAACTAGTACCGGGAAAGTTCAGATATGGGATGCGTCACGCTGCAAAAGAAC 754
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 762 GGCTGTTGGAACTAGTACCGGGAAAGTTCAGATATGGGATGCGTCACGCTGCAAGAGAAC 821
Query 755 AAGAACAATGGAAGGTCATCGTCTAAGAGTTGGAGCCCTGGCATGGGGTTCATCGGTTCT 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 AAGAACAATGGAAGGTCATCGTCTAAGAGTTGGAGCCCTGGCATGGGGTTCATCGGTTCT 881
Query 815 GTCATCTGGTAGCAGAGATAAGAGTATTCTTCAGAGAGACATAAGGTGTCAAGAAGATCA 874
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GTCATCTGGTAGCAGAGACAAGAGTATTCTTCAGAGAGACATAAGGTGTCAAGAAGATCA 941
Query 875 TGTCAGTAAACTTA-CAGGTCACAAATCTGAGGTATGCGGACTCAAGTGGTCTTATGACA 933
|||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 942 TGTCAGTAAA-TTGGCAGGTCATAAATCTGAGGTATGCGGACTCAAGTGGTCTTATGACA 1000
Query 934 ACAGGGAGTTAGCATCTGGTGGAAACGACAATCGGCTTTTTGTATGGAACCAACATTCAA 993
|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1001 ACAGAGAGCTAGCATCTGGTGGAAACGACAATAGGCTTTTTGTATGGAACCAACATTCAA 1060
Query 994 CACAACCGGTTTTGAAATATAGTGAACACACTGCAGCGGTGAAAGCCATTGCTTGGTCTC 1053
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1061 CACAACCGGTTTTGAAATATAGTGAACACACTGCAGCTGTTAAAGCCATTGCTTGGTCTC 1120
Query 1054 CTCATGTTCATGGGCTTCTTGCCTCTGGTGGGGGAACTGCTGATAGGTGCATACGTTTTT 1113
|||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||
Sbjct 1121 CTCATGTTCATGGGCTTCTTGCTTCTGGTGGTGGTACTGCTGATAGATGCATACGTTTTT 1180
Query 1114 GGAATACAACGACGAACACTCATTTAAGCTCCATAGATACTTGCAGTCAGGTATGCAATC 1173
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1181 GGAATACAACCACGAATACTCATTTAAGTTCCATAGATACTTGCAGTCAGGTATGCAATC 1240
Query 1174 TCGCTTGGTCTAAGAACGTAAACGAGCTAGTTAGCACACATGGATACTCTCAGAACCAAA 1233
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1241 TAGCTTGGTCTAAGAACGTAAACGAGCTTGTTAGCACACACGGATACTCTCAGAACCAAA 1300
Query 1234 TCATTGTCTGGAAATACCCAACCATGTCCAAAATTGCAACTCTGACTGGTCACACATACC 1293
||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 1301 TCATTGTCTGGAAATACCCAACCATGTCCAAAATTGCTACTCTAACCGGTCACACATACC 1360
Query 1294 GCGTCCTGTACCTTGCGGTTTCACCCGATGGACAGACGATTGTTACCGGAGCAGGAGATG 1353
| ||| | ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1361 GAGTCTTATACCTTGCGGTTTCACCCGATGGACAGACGATTGTAACAGGAGCAGGAGATG 1420
Query 1354 AAACCTTACGGTTCTGGAATGTGTTTCC-TTCCCCAAAATCTCAGAACACGGATACTGAA 1412
|||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 1421 AAACCTTAAGGTTCTGGAATGT-TTTCCCTTCCCCAAAATCTCAGAACACGGATAGTGAA 1479
Query 1413 ATCGGGTCGTCTTTCTTTGGTAGAACAACAATTCGGTGA-AAGGTTACTTTCAA 1465
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1480 ATCGGGTCGTCTTTCTTTGGTAGAACAACAATTCGGTGAGAAG-TTACTTTCAA 1532
> AT4G11920.1 | Symbols: CCS52A2, FZR1 | cell cycle switch protein
52 A2 | chr4:7160276-7163382 REVERSE LENGTH=1895
Length=1895
Score = 1144 bits (619), Expect = 0.0
Identities = 1144/1392 (82%), Gaps = 57/1392 (4%)
Strand=Plus/Plus
Query 93 CCGTCGATGAATAC-TCCGGTGGTTTCACTTGAGTCACGAATCAATCGATTAATCAATGC 151
|||||||||||| | |||| ||| ||||| |||||||||||||| || |||||| || |
Sbjct 186 CCGTCGATGAAT-CGTCCGACGGTGTCACTCGAGTCACGAATCAACCGTTTAATCGATTC 244
Query 152 TAATCAATCTCAATCACCATC-AAGGTCTATATACTCTGATAGATTTATTCCCAGTAGAT 210
||||| | ||| || || || || |||| ||||| ||||| |||||||| |||||||
Sbjct 245 GAATCATTATCACTCTCCTTCGAA-ACCTATTTACTCAGATAGGTTTATTCCAAGTAGAT 303
Query 211 CCGGATCCAATTTCGCTCTCTTCGATCT---ATCTCCTTCTCCGAGT---AAAGATGGTA 264
| || ||||||||||| || |||||| | |||| |||| |||| | |||||||| |
Sbjct 304 CTGGTTCCAATTTCGCGCTTTTCGATTTGGCATCTTCTTCGCCGAATAAGAAAGATGGGA 363
Query 265 AGGAAGATGGAGCTGGCTCTTACGCTACTCTGTTGCGTGCGGC-CATGTTTGGACCAGAG 323
| |||||||| ||||| ||||| || | ||| ||| |||| | | ||||| || | |
Sbjct 364 AAGAAGATGGGGCTGGTTCTTATGCGAGTCTTTTGAAAACGGCGC-TTTTTGGTCCGGTG 422
Query 324 ACGCCGGAG--AAGAGA-GATATTACTGGGTTCTCTTCTTCCAGGAATATTTTCAGGTTT 380
||||||||| ||| || | | ||| |||||| ||| | || |||||||||| ||||||
Sbjct 423 ACGCCGGAGAAAAGTGATGTTGTTAATGGGTTTTCTCCGTCGGGGAATATTTTTAGGTTT 482
Query 381 AAGACGGAGACGCATCGGTCTTTGAATTCT-TTTTCTCCTTTTGGTGT-TGATGAT--TC 436
|||||||| ||||| |||||||||||| | | | | ||||||| | | ||||| | |
Sbjct 483 AAGACGGAAACGCAGAGGTCTTTGAATT-TGTATCCGCCTTTTGAT-TCTGATG-TGGT- 538
Query 437 TCCTGGTGTTTGTCATAGTCCTGTTAAAGCTC-CC-AGGAAAG-TGCCGCGATCGCCGTA 493
| ||||||| | | |||||||||| ||| || || ||| ||| | | | || || ||
Sbjct 539 TAGTGGTGTTAGCCCTAGTCCTGTT-AAG-TCGCCGAGG-AAGATTCTTAGGTCTCCTTA 595
Query 494 TAAAGTATTGGATGCACCGGCCT-TGCAAGATGATTTTTATC-TGAATCTCGTGGATTGG 551
||| ||||||||||| |||| || |||||||||||||||| | |||||||||||||||||
Sbjct 596 TAAGGTATTGGATGCGCCGG-CTCTGCAAGATGATTTTTA-CTTGAATCTCGTGGATTGG 653
Query 552 TCTGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTTTATTTATGGAATGCTTGT 611
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 654 TCGGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTGTATTTGTGGAATGCTTGT 713
Query 612 AGCAGCAAGGTAACTAAGTTATGTGATCTTGGAG-CTGAGGATAGTGTTTGCTCTGTGGG 670
|| |||||||||||||||||||| |||||||| | | || || | ||||||||| || ||
Sbjct 714 AGTAGCAAGGTAACTAAGTTATGCGATCTTGGGGTC-GATGAAACTGTTTGCTCAGTTGG 772
Query 671 TTGGGCGTTACGTGGAACTCATCTGGCTGTTGGAACTAGTACCGGGAA-AGTTCAGATAT 729
|||||| |||||||||| ||| ||||| |||||||||||| ||| || ||| |||||||
Sbjct 773 TTGGGCACTACGTGGAACACATTTGGCTATTGGAACTAGTAGCGG-AACAGTACAGATAT 831
Query 730 GGGATGCGTCACGCTGCAA-AAGAACAAGAACAATGGAAGGTCATCGTCTAAGAGTTGGA 788
|||||| || ||| ||||| || | | ||||||||||||||||||| ||||||||||||
Sbjct 832 GGGATGTGTTACGATGCAAGAATATTA-GAACAATGGAAGGTCATCGGCTAAGAGTTGGA 890
Query 789 GCCCTGGCATGGGGTTCATCGGTTCTGTCATCTGGTAGCAGAGATAAGAGTATTCTTCAG 848
||| |||||||| | ||||| |||||||| || ||||| ||||| ||||| || ||||||
Sbjct 891 GCCTTGGCATGGAGCTCATCTGTTCTGTCTTCAGGTAGTAGAGACAAGAGCATACTTCAG 950
Query 849 AGAGACATAAGGTG-TCAAGAAGATCATGTCAGTAAACTTACAGGTCACAAATCTGAGGT 907
|||||||| | | |||||||||||||||||||||||||| |||||||||||| || |
Sbjct 951 AGAGACATTCG-TACTCAAGAAGATCATGTCAGTAAACTTAAAGGTCACAAATCCGAAAT 1009
Query 908 ATGCGGACTCAAGTGGTCTTATGACAA-CAGGGAGTTAGCATCTGGTGGAAACGACAATC 966
|| |||||||| ||||||| ||||| | | ||| ||||||| |||||||||||||||
Sbjct 1010 CTGTGGACTCAAATGGTCTTCGGACAATC-GCGAGCTAGCATCAGGTGGAAACGACAATA 1068
Query 967 GGCTTTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAAATA-TAGTGAACACACT 1025
||| ||||||||||||||||||||||||||||||||||||| || | |||||||| |
Sbjct 1069 AGCTGTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAGATTCT-GTGAACACGCC 1127
Query 1026 GCAGCGGTGAAAGCCATTGCTTGGTCTCCTCATG-TTCATGGGCTTCTTGCCTCTGGTGG 1084
||||| |||||||||||||| |||||||| ||| || ||| |||||||| ||||||||
Sbjct 1128 GCAGCAGTGAAAGCCATTGCGTGGTCTCCACATCATTT-TGGACTTCTTGCTTCTGGTGG 1186
Query 1085 GGGAACTGCTGATAGGTGCATACGTTTTTGGAATACAACGACGAACACTCATTTAAGCTC 1144
|| ||||||||||| || || ||||| ||||| |||||||| ||||||||||||| |
Sbjct 1187 TGGCACTGCTGATAGATGTATCCGTTTCTGGAACACAACGACAAACACTCATTTAAATTG 1246
Query 1145 CATAGATACTTGCAGTCAGGTATGCAATCTCGCT-TGGTCTAAGAACGTAAACGAGCTAG 1203
| ||||||| ||| ||||| || ||| | | | |||||||||||||| || ||||| |
Sbjct 1247 CGTAGATACCAACAGCCAGGTGTGTAATTTGG-TATGGTCTAAGAACGTGAATGAGCTTG 1305
Query 1204 TTAGCACACATGGATACTCTCAGAACCAAATCATTGTCTGGAAATACCCAACCATGTCCA 1263
| |||||||| || || || |||||||||||||| ||||||||||| ||||||||||| |
Sbjct 1306 TGAGCACACACGGGTATTCCCAGAACCAAATCATCGTCTGGAAATATCCAACCATGTCTA 1365
Query 1264 AAATTG-CAACTCTGACTGGTCACACATACCGCGTCCTGTACCTTGCGGTTTCACCCGAT 1322
|| ||| ||||||| ||||||||| | |||||||| |||||||||||||| ||||| |||
Sbjct 1366 AA-TTGGCAACTCTCACTGGTCACTCGTACCGCGTTCTGTACCTTGCGGTGTCACCGGAT 1424
Query 1323 GGACAGACGATTGTTACCGGAGCAGGAGATGAAACCTT-ACGGTTCTGGAATGTGTTTCC 1381
|||||||| ||||| || |||||||||||||||||||| | | ||||||||||| || ||
Sbjct 1425 GGACAGACAATTGTGACAGGAGCAGGAGATGAAACCTTGA-GATTCTGGAATGTCTTCCC 1483
Query 1382 TTCCCCAAAATCTCAGAACACGGATA-CTGAAATCGGGTCGTCTTTCTTT-GGTAGAACA 1439
||| || |||||||||| || ||| | | ||||||||| | | | ||||| |||||||||
Sbjct 1484 TTCTCCGAAATCTCAGAGCAGGGAGAGC-GAAATCGGGGCAT-TATCTTTTGGTAGAACA 1541
Query 1440 ACAATTCGGTGA 1451
||||| ||||||
Sbjct 1542 ACAATCCGGTGA 1553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72539787525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5