BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945829
Length=1069
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22900.1 | Symbols: | Protein of unknown function (DUF1191)... 1628 0.0
AT4G11950.1 | Symbols: | Protein of unknown function (DUF1191)... 507 1e-142
> AT4G22900.1 | Symbols: | Protein of unknown function (DUF1191)
| chr4:12010177-12011356 FORWARD LENGTH=1180
Length=1180
Score = 1628 bits (881), Expect = 0.0
Identities = 1019/1082 (94%), Gaps = 23/1082 (2%)
Strand=Plus/Plus
Query 1 TAGATTCTCTTGATCCTCTCATGGATTCATTCTCTTTTTGTATCATCATC---ATACTTC 57
|||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 25 TAGATTCTCTTGTTCCTCTTATGGATTCATTCTCTTTTTGTATCATCATCATGATACTTC 84
Query 58 TCTTATTATCATTCCACCAATCTGAGTCTCAATCGATTCAATCTACACATCTCCTTGATC 117
|| |||||||||||||||||| ||||||||| |||||||||||||||||| |||||||
Sbjct 85 TC---TTATCATTCCACCAATCTAAGTCTCAATTGATTCAATCTACACATCTTCTTGATC 141
Query 118 TCATGATTAGAGATTACACCATTAGAAACTTTAAGCTCAATCTCAACACAGGCATCACTC 177
||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 142 TCATGATCAGAGATTACACCATTAGAAACTTTAAGCTCAATTTCAACACAGGCGTCACTC 201
Query 178 AGAAAATCCATCTCCCTTCTAATTTCTCTGGTATCGACATTGACACGGTCAAGTTAAGGT 237
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 202 AGAAAATCTATCTCCCTTCTAATTTCTCTGGTATCGATATTGACACGGTCAAGTTAAGGT 261
Query 238 GTGGGAGTTTGAGAAGATATGGAGCAAAAATTGGAGAGTTTCACATCGGTTCAGGCGTTA 297
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 262 GTGGGAGTTTGAGAAGATATGGCGCAAAAATTGGAGAGTTTCACATCGGTTCAGGCCTTA 321
Query 298 CGGTGGAGCCATGTCCGGAGAGAGTCATGCTAATTAGACAAAACCTTGGTTTGAATTGGT 357
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 322 CGGTGGAGCCATGTCCGGAGAGAGTCATGCTAATTAGACAAAACTTTGGTTCGAATTGGT 381
Query 358 CCTCAATCTACTCTACTGGTTATAACTTATCCGGCTACAATTACAAGCTCGTGTCACCGG 417
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 382 CTTCAATCTACTCTACTGGTTATAACTTATCCGGTTACAATTACAAGCTCGTGTCACCGG 441
Query 418 TTCTTGGTTTATTGGCTTATAATGCTAACCCTGACGGTGTGGCCACGAATCCTTATGAGG 477
|||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||
Sbjct 442 TTCTTGGTTTGTTGGCTTATAATGCTAACCCTGACGGTGTGGCCAGGAACCCTTACGAGG 501
Query 478 TTAACGTTGTAGGTACCGATCAAAACCCAATTTTAGTCGATTTCTTGAGCAACAAGGCAA 537
|||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||||||
Sbjct 502 TTAATGTTGTAGGTACCGATCAAAACCCAATCTTAATCGATTTCTTGATCAACAAGGCAA 561
Query 538 CTAATAACACTAGCCCTAACCCTACGACGACGAAGAAGAACTCGTCAGTCTTGTGTGCGT 597
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 562 CTAATAACACTAGCCCTAACCCT------ACGAAGAAGAACTCGTCAGTCTTGTGTGCGT 615
Query 598 GTTTTACAAGTAAC-GCTAACACAACGTTTAGTGAGCAAGTCTCGCCGTATGTATGTAAA 656
|||||||||| ||| | ||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 616 GTTTTACAAGCAACAG-TAACACAACGTTTAGCGAGCAAGTCTCGCCGTATGTGTGTAAA 674
Query 657 GGGACAAGACAAGGGCATTACGCTCTCGTGATGAAGACAGAAGCTCAAAAAGATGATCAT 716
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GGTACAAGACAAGGGCATTACGCTCTCGTGATGAAGACAGAAGCTCAAAAAGATGATCAT 734
Query 717 G-A--CGGTGGT-G--GTGGTGGAGTGGTGACGTCATCGACGGAGATGAATGGTGGCAAC 770
| | |||||| | |||||||||||||| | |||||||||||| ||||||||||||||
Sbjct 735 GAAGGTGGTGGTAGTAGTGGTGGAGTGGTGGCATCATCGACGGAGGTGAATGGTGGCAAC 794
Query 771 GGAGGAGGAAAGTTGAGCCGGTGGAAAGTGGCGGTGGGGAGTGTGATTGGGTCAGGGATT 830
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 795 GGAGGAGGAAAGTTGAGCCGTTGGAAAGTGGCGGTGGGGAGTGTGATAGGGTCAGGGATT 854
Query 831 GGAGCAATTCTGCTGGGAATGTTAGTGGTGGCGATGCTGGtgaaggtgaagaagaaagca 890
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 855 GGAGCAATTCTGCTGGGAATGTTAGTGGTGGCGATGTTGGTGAAGGGGAAGAAGAAAGCA 914
Query 891 atgagagaagaaatagagagaagagcttatgaagaagaagCTCTTCAGGTTTCAATGGTG 950
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 915 ATGAGAGAAGAAATGGAGAGAAGAGCTTATGAAGAAGAAGCTCTTCAGGTGTCAATGGTG 974
Query 951 GGTCATGTTAGAGCTCCTACTGCTCCTGGAACTAGAACTCTTCCTAGAATTGCCGATGAT 1010
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 975 GGTCATGTTAGAGCTCCTACTGCTCCTGGAACTAGAACTCTTCCTAGAATTTCCGATGAT 1034
Query 1011 AGGTATAA-AAA--CACTCATATGAATAGTAATTATCCATAATTATCATTTGTTTTCTGA 1067
|||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1035 AGGTATAATAAAAACACTCATTTGAATAGTAATTATCCATAATTATCATTTGTTTTCTGA 1094
Query 1068 TT 1069
||
Sbjct 1095 TT 1096
> AT4G11950.1 | Symbols: | Protein of unknown function (DUF1191)
| chr4:7173276-7174259 REVERSE LENGTH=984
Length=984
Score = 507 bits (274), Expect = 1e-142
Identities = 775/1007 (77%), Gaps = 73/1007 (7%)
Strand=Plus/Plus
Query 41 TATCATCATCATACTTCTCTTATTATCAT-TCCACCAATCTGAGTCTCA-ATCGATTCAA 98
|||| ||||||| | | |||| || |||| | || |||| | ||||| | | ||| ||
Sbjct 18 TATCTTCATCAT-CCT-TCTT-TT-TCATGTACATAAATCCAAATCTCAGA-CCATTGAA 72
Query 99 TCTA-CACATCTCCTTGATCTCATGATTAGAGATTACACCATTAGAAACTTTAAGC-TCA 156
|| | ||||| | |||||||| ||||| ||||||||||||||||||||||| || | | |
Sbjct 73 TC-AGCACATTTTCTTGATCTTATGATCAGAGATTACACCATTAGAAACTTCAA-CAT-A 129
Query 157 -ATCTCAACACA-G-GCATCACT-CAGAAAATCCATCTCCCTTCTAATTTCT-CTGGTAT 211
|| |||| ||| | || | | | |||||| ||||||| ||||| ||||||| || ||
Sbjct 130 CATTTCAAGACAGGTGC-T-A-TCCAGAAAGTCCATCTTCCTTCGAATTTCTCCT-CCAT 185
Query 212 CGACATTGACAC-GGTCAAGTTAAGGTGTGGGAGTTTGAGAAGATATGGAGCAAAAATTG 270
|| || | ||| | | ||||| || |||||||||||||||||| | || |||| |||||
Sbjct 186 TGATATCGCCACAGCT-AAGTTTAGATGTGGGAGTTTGAGAAGACACGGTGCAAGAATTG 244
Query 271 GAGAGTTTCACATCGGTTCAGGCGTT-ACGGTGGAGCCATGTCCGGAGAGAGTCATGCTA 329
||||||||||| | ||| | ||| || || |||||||||||| |||||||| || ||
Sbjct 245 GAGAGTTTCACTTAGGTCCGGGC-TTGACCGTGGAGCCATGTGTTGAGAGAGTGATCCTG 303
Query 330 ATTAGACAAAACCTT--GGTTTGAATTGGTC--CTCA-ATCTACTCTACTGGTTATAACT 384
| ||||| || ||| ||||| || ||||| || | || ||||| || ||||||||||
Sbjct 304 GTGAGACAGAA-CTTGGGGTTT-AACTGGTCTTCTTATATTTACTCAACCGGTTATAACT 361
Query 385 TATCCGGCTACAATTACAAGCTCGTGTCACCGGTTCTTGGTTTATTGGCTTATAATGCTA 444
|| |||| ||||| ||| ||| ||||| || |||||||||||||||||||| ||| | |
Sbjct 362 TAACCGGTTACAAATACCGGCTTGTGTCTCCTGTTCTTGGTTTATTGGCTTACAATTCAA 421
Query 445 ACCCTGACGGTGTGGCCACGAATCCTTATGAGGTTAACGTTGTAGGTACCGATCAAAACC 504
| || |||||||| || ||||||||||||||||||||| | || || || |||||||
Sbjct 422 ATCCGGACGGTGTTGCTGTGAATCCTTATGAGGTTAACGTAATGGGCACGGAACAAAACC 481
Query 505 CAATTTTAG-TCGATTTCTTGAGCAACAAGGCAACTAATAACACTAGCCCTAACCCTACG 563
| ||||| | || | ||||| |||| |||| | | | ||||||||| ||||
Sbjct 482 CTATTTT-GATCAAATTCTTAAGCAGTGAGGC-A--AGT---GGTAGCCCTAAACCTA-- 532
Query 564 ACGACGAAGAAGAACTCGTCAGTCTTGTGTGCGTGTTTTACAAGTAACGCTAACACAACG 623
|| |||||||||||||| || ||||||||||| || || |||||||||| ||||| ||||
Sbjct 533 AC-ACGAAGAAGAACTCATCTGTCTTGTGTGCTTGCTTCACAAGTAACGGTAACATAACG 591
Query 624 TTTAGTGAGCAAGTCTC-GCCGTATGTATGTAAAGGG-ACAAGACAAGGGCATTACGCTC 681
||||| |||||||| || | | ||||| || ||| |||||||||||||||||||| |
Sbjct 592 TTTAGAGAGCAAGTTTCAG-CTTATGTTTG-CTTGGGAACAAGACAAGGGCATTACGCGC 649
Query 682 TCGTGATGAAGACAGAAGCTCA-AAAAGATGATC-ATGACGGTGGTGGTGGTGG-AGTGG 738
| || || | || |||||| | || || | || |||| || ||||| |
Sbjct 650 T--TG-TG-A-TTAG-AGCTCATGATAG-TG-GCGGTGGCGGTAGT-ACGGTGGTAACAC 700
Query 739 TGACGTCATCGACGGAGATGAATGGTGGCAACGGAGGAGGAAAGTTGAGCCGGTGGAAAG 798
| ||||||| ||| ||| || || |||| | ||||| ||||||||||||||||
Sbjct 701 CGTCGTCATCTCCGGCTTTGACTGACGGTGGCGGA-G-GGAAA-TTGAGCCGGTGGAAAG 757
Query 799 TGGCGGTGGGGAGTGTGATTGGGTCAGGGATTGGAGCAATTCTGCT-GGGAATGTTAGTG 857
||||||| ||||||||||| || ||| |||||||| ||||| | ||| | || |||
Sbjct 758 TGGCGGTTGGGAGTGTGATAGGTTCAATAATTGGAGCGTTTCTGTTAGGG-TTATTGGTG 816
Query 858 GTGGCGATGCTGGtg-aaggtgaagaagaaagcaatgagagaagaaatagagagaagagc 916
||||||||| | ||| |||| |||||||||||| |||||||| || || ||||| |||||
Sbjct 817 GTGGCGATGGTAGTGAAAGG-GAAGAAGAAAGCGATGAGAGAGGAGATGGAGAGGAGAGC 875
Query 917 ttatgaagaagaagCTCTTCAGGTTTCAATGGTGGGTCATGTTAGAGCT---CCTACTGC 973
||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||
Sbjct 876 TTATGAAGAAGAAGCACTTCAGGTTTCAATGGTGGGTCATGTTAGAGCTAATCCTAATGC 935
Query 974 TCCTG-GAACTAGAACTCTTCCTAGAATTGCCGATGA-TAGGTATAA 1018
| | | || | ||||| |||| ||| ||| || | |||||||||
Sbjct 936 TTC-GAGATCAAGAACGATTCCAAGATTTGAAAAT-ACTAGGTATAA 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52359168435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5