BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945834 Length=1261 Score E Sequences producing significant alignments: (Bits) Value AT4G22840.1 | Symbols: | Sodium Bile acid symporter family | c... 1864 0.0 > AT4G22840.1 | Symbols: | Sodium Bile acid symporter family | chr4:11991497-11993770 REVERSE LENGTH=1463 Length=1463 Score = 1864 bits (1009), Expect = 0.0 Identities = 1187/1271 (93%), Gaps = 19/1271 (1%) Strand=Plus/Plus Query 2 AAGTCAAAAGAAGAAAAAGATGAGTGTGATCACAACTCCAATAGAAACCCTGCACCTAAA 61 ||||| |||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| Sbjct 78 AAGTCCAAAGAA-AAAAA-ATGAGCGTGATCACAACTCCAATAGAGACCCTGCACCTAAA 135 Query 62 GTCAACACTTCGTCTTCTACCACGAGCTGTTTAT--C-G-C-A--G--TCAAGTTTTCCC 112 |||||||||||||||||||||||||||||||||| | | | | | |||||||||||| Sbjct 136 GTCAACACTTCGTCTTCTACCACGAGCTGTTTATCGCAGTCAACGGATTCAAGTTTTCCC 195 Query 113 GCCCAACATCTTCTCGAACTCTTCTCTGAGTTCTCCACTTCGAATTGACCCAATCTCTCA 172 ||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||| Sbjct 196 GCCCAACATCTTCTCGAACACTTCTCTGAGTTCTCCACTTCGCATCGACCCAATCTCTCA 255 Query 173 AG--GGATCGGATCGAGGAATTTGTGGCGTAGATATGCATCTGATAAGTTCTCGGAGATG 230 || || ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 256 AGTTGG--CGGATCGAGGAATTTGTGGCGTAGATATGCATCTGATAATTTCTCGGAGATG 313 Query 231 GGTTTAGATCCTGAAGCTAATTCAGTT-AAGGTTATTGACAAGGCTTCTATAGTGGATAC 289 ||||| ||||||| |||| || || || ||||||||||| ||| ||||||||||||||| Sbjct 314 GGTTTGGATCCTGGAGCTGATCCA-TTCAAGGTTATTGAGAAGCCTTCTATAGTGGATAG 372 Query 290 AATGAAGAAAGCTAACTCAATTCTTCCTCATGTAGTGTTGGCGAGTACAATTTTAGCTCT 349 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 373 AATGAAGAAAGCAAACTCAATTCTTCCTCATGTAGTGTTGGCGAGTACAATATTAGCTCT 432 Query 350 TCTCTATCCTCCTTCTTTCACTTGGTTTACGTCGAGGTACTTCGTGCCCGCTTTAGGGTT 409 | |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 433 TATCTATCCTCCTTCTTTCACTTGGTTTACGTCGAGGTACTTTGTGCCCGCTTTAGGTTT 492 Query 410 CTTGATGTTTGCTGTTGGCATCAATTCAAACGAGAAAGACTTTCTTGAAGCTTTCAAAAG 469 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 493 TTTGATGTTTGCGGTTGGTATCAATTCAAACGAGAAAGACTTTCTTGAAGCTTTCAAAAG 552 Query 470 ACCAAAAGCTATTCTCCTTGGTTATGTTGGACAATATCTCGTAAAGCCAATCCTAGGTTT 529 |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 553 ACCAAAAGCTATCCTCCTCGGTTATGTTGGACAATATCTCGTAAAGCCTGTCCTAGGTTT 612 Query 530 CATCTTTGGCCTAGCTGCGGTGTCTGTATTCCAACTCCCAACTCCAATTGGTGCTGGAAT 589 |||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||| Sbjct 613 CATCTTTGGCCTAGCTGCTGTTTCTCTTTTCCAACTCCCAACTCCAATTGGTGCTGGAAT 672 Query 590 CATGTTGGTTTCATGTGTTAGTGGAGCTCAGTTATCAAACTACGCAACTTTCTTAACTGA 649 ||||||||| ||||||||||||||||||||||| |||||||| || || ||| ||||||| Sbjct 673 CATGTTGGTATCATGTGTTAGTGGAGCTCAGTTGTCAAACTATGCGACATTCCTAACTGA 732 Query 650 TCCAGCATTGGCACCTCTTAGCATCGTCATGACATCTCTATCAACCGCTACTGCAGTTCT 709 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 733 TCCAGCATTGGCACCTCTTAGCATCGTCATGACATCTCTATCAACCGCTACTGCGGTTCT 792 Query 710 TGTCACACCGATGCTATCTCTCTTGCTCATTGGGAAGAAATTACCCGTTGATGTGAAAGG 769 |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||| Sbjct 793 TGTCACACCGATGCTATCACTCCTGCTCATTGGGAAGAAACTACCCGTTGATGTAAAAGG 852 Query 770 AATGATATCCAGCATTCTTCAGGTTGTAATCGCACCAATCGCTGCAGGATTGCTACTAAA 829 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 853 AATGATATCCAGCATTCTTCAGGTTGTAATCGCACCAATCGCTGCAGGATTGCTACTAAA 912 Query 830 CAAGTTGTTCCCAAAAGTATCTAATGCAATCCGACCATTTCTACCAATTCTATCGGTTCT 889 ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| Sbjct 913 CAAGTTGTTCCCAAAAGTATCAAATGCAATCCGACCATTTCTCCCGATTCTATCGGTTCT 972 Query 890 TGACACGGCTTGTTGTGTTGGAGCACCACTCGCATTGAACATAAACTCGGTCATGTCTCC 949 ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 973 CGACACAGCTTGCTGCGTTGGAGCACCACTCGCATTGAACATAAACTCGGTCATGTCTCC 1032 Query 950 ATTTGGAGCCACCATATTGTTACTAGTAACAATGTTTCATCTCTCAGCTTTCCTCGCTGG 1009 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1033 ATTTGGAGCCACCATATTGTTACTAGTAACAATGTTTCATCTCTCAGCTTTCCTCGCTGG 1092 Query 1010 ATACTTCCTTACCGGCTCCGTCTTTAGAAATGCTCCAGACGCTAAAGCCATGCAAAGAAC 1069 ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1093 ATACTTCCTTACCGGTTCTGTCTTTAGAAACGCTCCAGACGCTAAAGCCATGCAAAGAAC 1152 Query 1070 ATTGTCCTATGAAACTGGAATGCAGAGTAGCCTTTTGGCTCTAGCGCTTGCGACTAAGTT 1129 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1153 ATTGTCCTATGAAACTGGAATGCAGAGTAGCCTTTTGGCTCTAGCGCTTGCTACTAAGTT 1212 Query 1130 CTTTCAAGATCCTCTTGTGGGGATTCCTCCTGCTGTCTCTACGGTGGTAATGTCATTGAT 1189 |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1213 CTTTCAAGATCCTCTTGTGGGGATTCCTCCTGCTATATCTACGGTGGTAATGTCATTGAT 1272 Query 1190 GGGGTTCACGCTTGTTATGATCTGGTCTAACGAAAAAGAGAAAAACATTT-AACAATGTA 1248 ||||||||| || ||| ||||||||||||| ||||| ||| || |||||| |||| | | Sbjct 1273 GGGGTTCACTCTCGTTTTGATCTGGTCTAAGGAAAA-GAGTAACACATTTTAACATTTTG 1331 Query 1249 ATTTAATTTCA 1259 |||| ||||| Sbjct 1332 ATTTTGTTTCA 1342 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61997673075 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5