BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945834
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22840.1 | Symbols: | Sodium Bile acid symporter family | c... 1864 0.0
> AT4G22840.1 | Symbols: | Sodium Bile acid symporter family |
chr4:11991497-11993770 REVERSE LENGTH=1463
Length=1463
Score = 1864 bits (1009), Expect = 0.0
Identities = 1187/1271 (93%), Gaps = 19/1271 (1%)
Strand=Plus/Plus
Query 2 AAGTCAAAAGAAGAAAAAGATGAGTGTGATCACAACTCCAATAGAAACCCTGCACCTAAA 61
||||| |||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 78 AAGTCCAAAGAA-AAAAA-ATGAGCGTGATCACAACTCCAATAGAGACCCTGCACCTAAA 135
Query 62 GTCAACACTTCGTCTTCTACCACGAGCTGTTTAT--C-G-C-A--G--TCAAGTTTTCCC 112
|||||||||||||||||||||||||||||||||| | | | | | ||||||||||||
Sbjct 136 GTCAACACTTCGTCTTCTACCACGAGCTGTTTATCGCAGTCAACGGATTCAAGTTTTCCC 195
Query 113 GCCCAACATCTTCTCGAACTCTTCTCTGAGTTCTCCACTTCGAATTGACCCAATCTCTCA 172
||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||
Sbjct 196 GCCCAACATCTTCTCGAACACTTCTCTGAGTTCTCCACTTCGCATCGACCCAATCTCTCA 255
Query 173 AG--GGATCGGATCGAGGAATTTGTGGCGTAGATATGCATCTGATAAGTTCTCGGAGATG 230
|| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 256 AGTTGG--CGGATCGAGGAATTTGTGGCGTAGATATGCATCTGATAATTTCTCGGAGATG 313
Query 231 GGTTTAGATCCTGAAGCTAATTCAGTT-AAGGTTATTGACAAGGCTTCTATAGTGGATAC 289
||||| ||||||| |||| || || || ||||||||||| ||| |||||||||||||||
Sbjct 314 GGTTTGGATCCTGGAGCTGATCCA-TTCAAGGTTATTGAGAAGCCTTCTATAGTGGATAG 372
Query 290 AATGAAGAAAGCTAACTCAATTCTTCCTCATGTAGTGTTGGCGAGTACAATTTTAGCTCT 349
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 373 AATGAAGAAAGCAAACTCAATTCTTCCTCATGTAGTGTTGGCGAGTACAATATTAGCTCT 432
Query 350 TCTCTATCCTCCTTCTTTCACTTGGTTTACGTCGAGGTACTTCGTGCCCGCTTTAGGGTT 409
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 433 TATCTATCCTCCTTCTTTCACTTGGTTTACGTCGAGGTACTTTGTGCCCGCTTTAGGTTT 492
Query 410 CTTGATGTTTGCTGTTGGCATCAATTCAAACGAGAAAGACTTTCTTGAAGCTTTCAAAAG 469
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TTTGATGTTTGCGGTTGGTATCAATTCAAACGAGAAAGACTTTCTTGAAGCTTTCAAAAG 552
Query 470 ACCAAAAGCTATTCTCCTTGGTTATGTTGGACAATATCTCGTAAAGCCAATCCTAGGTTT 529
|||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 553 ACCAAAAGCTATCCTCCTCGGTTATGTTGGACAATATCTCGTAAAGCCTGTCCTAGGTTT 612
Query 530 CATCTTTGGCCTAGCTGCGGTGTCTGTATTCCAACTCCCAACTCCAATTGGTGCTGGAAT 589
|||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||
Sbjct 613 CATCTTTGGCCTAGCTGCTGTTTCTCTTTTCCAACTCCCAACTCCAATTGGTGCTGGAAT 672
Query 590 CATGTTGGTTTCATGTGTTAGTGGAGCTCAGTTATCAAACTACGCAACTTTCTTAACTGA 649
||||||||| ||||||||||||||||||||||| |||||||| || || ||| |||||||
Sbjct 673 CATGTTGGTATCATGTGTTAGTGGAGCTCAGTTGTCAAACTATGCGACATTCCTAACTGA 732
Query 650 TCCAGCATTGGCACCTCTTAGCATCGTCATGACATCTCTATCAACCGCTACTGCAGTTCT 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 733 TCCAGCATTGGCACCTCTTAGCATCGTCATGACATCTCTATCAACCGCTACTGCGGTTCT 792
Query 710 TGTCACACCGATGCTATCTCTCTTGCTCATTGGGAAGAAATTACCCGTTGATGTGAAAGG 769
|||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||
Sbjct 793 TGTCACACCGATGCTATCACTCCTGCTCATTGGGAAGAAACTACCCGTTGATGTAAAAGG 852
Query 770 AATGATATCCAGCATTCTTCAGGTTGTAATCGCACCAATCGCTGCAGGATTGCTACTAAA 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 AATGATATCCAGCATTCTTCAGGTTGTAATCGCACCAATCGCTGCAGGATTGCTACTAAA 912
Query 830 CAAGTTGTTCCCAAAAGTATCTAATGCAATCCGACCATTTCTACCAATTCTATCGGTTCT 889
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 913 CAAGTTGTTCCCAAAAGTATCAAATGCAATCCGACCATTTCTCCCGATTCTATCGGTTCT 972
Query 890 TGACACGGCTTGTTGTGTTGGAGCACCACTCGCATTGAACATAAACTCGGTCATGTCTCC 949
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 CGACACAGCTTGCTGCGTTGGAGCACCACTCGCATTGAACATAAACTCGGTCATGTCTCC 1032
Query 950 ATTTGGAGCCACCATATTGTTACTAGTAACAATGTTTCATCTCTCAGCTTTCCTCGCTGG 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 ATTTGGAGCCACCATATTGTTACTAGTAACAATGTTTCATCTCTCAGCTTTCCTCGCTGG 1092
Query 1010 ATACTTCCTTACCGGCTCCGTCTTTAGAAATGCTCCAGACGCTAAAGCCATGCAAAGAAC 1069
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1093 ATACTTCCTTACCGGTTCTGTCTTTAGAAACGCTCCAGACGCTAAAGCCATGCAAAGAAC 1152
Query 1070 ATTGTCCTATGAAACTGGAATGCAGAGTAGCCTTTTGGCTCTAGCGCTTGCGACTAAGTT 1129
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1153 ATTGTCCTATGAAACTGGAATGCAGAGTAGCCTTTTGGCTCTAGCGCTTGCTACTAAGTT 1212
Query 1130 CTTTCAAGATCCTCTTGTGGGGATTCCTCCTGCTGTCTCTACGGTGGTAATGTCATTGAT 1189
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1213 CTTTCAAGATCCTCTTGTGGGGATTCCTCCTGCTATATCTACGGTGGTAATGTCATTGAT 1272
Query 1190 GGGGTTCACGCTTGTTATGATCTGGTCTAACGAAAAAGAGAAAAACATTT-AACAATGTA 1248
||||||||| || ||| ||||||||||||| ||||| ||| || |||||| |||| | |
Sbjct 1273 GGGGTTCACTCTCGTTTTGATCTGGTCTAAGGAAAA-GAGTAACACATTTTAACATTTTG 1331
Query 1249 ATTTAATTTCA 1259
|||| |||||
Sbjct 1332 ATTTTGTTTCA 1342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5