BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945837
Length=613
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22830.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 688 0.0
> AT4G22830.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown
function DUF2499 (InterPro:IPR019634). | chr4:11990064-11991428
REVERSE LENGTH=859
Length=859
Score = 688 bits (372), Expect = 0.0
Identities = 466/510 (91%), Gaps = 11/510 (2%)
Strand=Plus/Plus
Query 103 CTTCTCCTCTCACCACCT-T-A--AA-C-GAAAGTGGGATCCGGAGCCGCAGCTTAATCC 156
||||| |||||||||||| | | || | | || | ||||||| |||||||| ||||| |
Sbjct 128 CTTCTTCTCTCACCACCTCTAACGAACCTGTAATTCGGATCCGAAGCCGCAGTTTAATTC 187
Query 157 ATGACCCGATTACGCTGTCGGGTCTTATCGGAACCGGTTTGATGGCGGCTGCGTTCATCA 216
|||||||| || ||||||||||||||||||||||| ||||| | |||||||| |||||||
Sbjct 188 ATGACCCGGTTGCGCTGTCGGGTCTTATCGGAACCAGTTTGGTTGCGGCTGCTTTCATCA 247
Query 217 CGGCGGGACCAGATTCTACAGCTATGGCGGC---GGTGGATTCTCTTCAGCTAAGCGAAC 273
|||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 248 CGGCGGGACCAGATGCTACTGCTTTGGCGGCGGTGGTGGATTCTCTTCAGCTAAGCGAAC 307
Query 274 CTG-CTAATGCGTTGTCTTTACCCACTTGGGCTGTTCATGTTTCCAGCGTTGTCGAATGG 332
| | | |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 308 C-GTCCAATGCGTTGTCTTTACCCACTTGGGCCGTTCATGTTTCCAGCGTTGTCGAATGG 366
Query 333 ATTACGGCGATGGCGTTGGTATGGAAATATGGAGAAAGAAAGGGTTATGAGTCTTGGAAA 392
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 367 ATTACGGCGATGGCATTGGTATGGAAGTATGGAGAAAGAAAGGGTTATGAGTCTTGGAAA 426
Query 393 GGTCTCTCATGGGGAATGGTACCTTTGCTTGGTGGAGCTCTTTGTGCATGCACATGGCAT 452
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 427 GGTCTCTCATGGGGAATGGTACCTTTGCTTGGTGGAGCTCTCTGTGCATGCACATGGCAT 486
Query 453 TTCTTTTACAATGATGAATCTCTTGAGGTGTTGGTCGCGCTTCAGGCGGCACTAACTGTA 512
||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 487 TTCTTCTACAACGATGAATCTCTTGAGGTGTTGGTCGCTCTTCAGGCAGCACTAACGGTG 546
Query 513 TTCGGTAATATTACTCTGTGCATTGCTGCCTTTCGAATCAACAAGTTGTCATCCAAAATT 572
|| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 547 TTTGGTAATATCACTCTCTGCATTGCTGCCTTTCGGATCAACAAGTTGTCATCCAAAATT 606
Query 573 GAAGTCTCTGAAAAACCATGATGGCTTAAC 602
|||||||||||||| ||||||||||| |||
Sbjct 607 GAAGTCTCTGAAAAGCCATGATGGCTAAAC 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29537678436
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5