BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945837 Length=613 Score E Sequences producing significant alignments: (Bits) Value AT4G22830.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 688 0.0 > AT4G22830.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634). | chr4:11990064-11991428 REVERSE LENGTH=859 Length=859 Score = 688 bits (372), Expect = 0.0 Identities = 466/510 (91%), Gaps = 11/510 (2%) Strand=Plus/Plus Query 103 CTTCTCCTCTCACCACCT-T-A--AA-C-GAAAGTGGGATCCGGAGCCGCAGCTTAATCC 156 ||||| |||||||||||| | | || | | || | ||||||| |||||||| ||||| | Sbjct 128 CTTCTTCTCTCACCACCTCTAACGAACCTGTAATTCGGATCCGAAGCCGCAGTTTAATTC 187 Query 157 ATGACCCGATTACGCTGTCGGGTCTTATCGGAACCGGTTTGATGGCGGCTGCGTTCATCA 216 |||||||| || ||||||||||||||||||||||| ||||| | |||||||| ||||||| Sbjct 188 ATGACCCGGTTGCGCTGTCGGGTCTTATCGGAACCAGTTTGGTTGCGGCTGCTTTCATCA 247 Query 217 CGGCGGGACCAGATTCTACAGCTATGGCGGC---GGTGGATTCTCTTCAGCTAAGCGAAC 273 |||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||| Sbjct 248 CGGCGGGACCAGATGCTACTGCTTTGGCGGCGGTGGTGGATTCTCTTCAGCTAAGCGAAC 307 Query 274 CTG-CTAATGCGTTGTCTTTACCCACTTGGGCTGTTCATGTTTCCAGCGTTGTCGAATGG 332 | | | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 308 C-GTCCAATGCGTTGTCTTTACCCACTTGGGCCGTTCATGTTTCCAGCGTTGTCGAATGG 366 Query 333 ATTACGGCGATGGCGTTGGTATGGAAATATGGAGAAAGAAAGGGTTATGAGTCTTGGAAA 392 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 367 ATTACGGCGATGGCATTGGTATGGAAGTATGGAGAAAGAAAGGGTTATGAGTCTTGGAAA 426 Query 393 GGTCTCTCATGGGGAATGGTACCTTTGCTTGGTGGAGCTCTTTGTGCATGCACATGGCAT 452 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 427 GGTCTCTCATGGGGAATGGTACCTTTGCTTGGTGGAGCTCTCTGTGCATGCACATGGCAT 486 Query 453 TTCTTTTACAATGATGAATCTCTTGAGGTGTTGGTCGCGCTTCAGGCGGCACTAACTGTA 512 ||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||| || Sbjct 487 TTCTTCTACAACGATGAATCTCTTGAGGTGTTGGTCGCTCTTCAGGCAGCACTAACGGTG 546 Query 513 TTCGGTAATATTACTCTGTGCATTGCTGCCTTTCGAATCAACAAGTTGTCATCCAAAATT 572 || |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 547 TTTGGTAATATCACTCTCTGCATTGCTGCCTTTCGGATCAACAAGTTGTCATCCAAAATT 606 Query 573 GAAGTCTCTGAAAAACCATGATGGCTTAAC 602 |||||||||||||| ||||||||||| ||| Sbjct 607 GAAGTCTCTGAAAAGCCATGATGGCTAAAC 636 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29537678436 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5